RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 CAPN15O75808 1086 aa26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 PLEKHA8P1O95397 391 aa26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 RTN1Q16799 776 aa26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 NSMFQ6X4W1 530 aa26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 FBXL16Q8N461 479 aa26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 PIGSQ96S52 555 aa26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 SPZ1Q9BXG8 430 aa26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 A1CFQ9NQ94 594 aaKnown RBP26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 PDRG1Q9NUG6 133 aa26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 RBM28Q9NW13 759 aaKnown RBP26.52■■□□□ 1.84
CCDC28B-203ENST00000461819 ABCB11O95342 1321 aa26.51■■□□□ 1.83
CCDC28B-203ENST00000461819 CYTH3O43739 400 aa26.51■■□□□ 1.83
CCDC28B-203ENST00000461819 SLC35G1Q2M3R5 365 aa26.51■■□□□ 1.83
CCDC28B-203ENST00000461819 PIBF1Q8WXW3 757 aa26.51■■□□□ 1.83
CCDC28B-203ENST00000461819 MTMR8Q96EF0 704 aa26.51■■□□□ 1.83
CCDC28B-203ENST00000461819 AMNQ9BXJ7 453 aa26.51■■□□□ 1.83
CCDC28B-203ENST00000461819 AGXT2Q9BYV1 514 aa26.51■■□□□ 1.83
CCDC28B-203ENST00000461819 FLRT1Q9NZU1 646 aa26.51■■□□□ 1.83
CCDC28B-203ENST00000461819 LCTP09848 1927 aa26.5■■□□□ 1.83
CCDC28B-203ENST00000461819 NFIBO00712 420 aa26.5■■□□□ 1.83
CCDC28B-203ENST00000461819 METAP2P50579 478 aaKnown RBP eCLIP26.5■■□□□ 1.83
CCDC28B-203ENST00000461819 RCAN1P53805 252 aa26.5■■□□□ 1.83
CCDC28B-203ENST00000461819 TRIM32Q13049 653 aa26.5■■□□□ 1.83
CCDC28B-203ENST00000461819 MFSD14CQ5VZR4 134 aa26.5■■□□□ 1.83
CCDC28B-203ENST00000461819 TMTC3Q6ZXV5 915 aa26.5■■□□□ 1.83
CCDC28B-203ENST00000461819 CMTR1Q8N1G2 835 aaKnown RBP26.5■■□□□ 1.83
CCDC28B-203ENST00000461819 RRP36Q96EU6 259 aaKnown RBP26.5■■□□□ 1.83
CCDC28B-203ENST00000461819 MAML3Q96JK9 1138 aa26.5■■□□□ 1.83
CCDC28B-203ENST00000461819 SMARCA1P28370 1054 aa26.49■■□□□ 1.83
CCDC28B-203ENST00000461819 TOB2Q14106 344 aaPredicted RBP26.49■■□□□ 1.83
CCDC28B-203ENST00000461819 MTFR1Q15390 333 aa26.49■■□□□ 1.83
CCDC28B-203ENST00000461819 ZNF792Q3KQV3 632 aa26.49■■□□□ 1.83
CCDC28B-203ENST00000461819 OLFML2BQ68BL8 750 aa26.49■■□□□ 1.83
CCDC28B-203ENST00000461819 SRBD1Q8N5C6 995 aaKnown RBP26.49■■□□□ 1.83
CCDC28B-203ENST00000461819 TMEM106CQ9BVX2 250 aa26.49■■□□□ 1.83
CCDC28B-203ENST00000461819 UPF2Q9HAU5 1272 aaKnown RBP26.49■■□□□ 1.83
CCDC28B-203ENST00000461819 SEC63Q9UGP8 760 aaKnown RBP26.49■■□□□ 1.83
CCDC28B-203ENST00000461819 DIS3Q9Y2L1 958 aaKnown RBP26.49■■□□□ 1.83
CCDC28B-203ENST00000461819 MCM3APO60318 1980 aa26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 DNAJC25-GNG10A0A024R161 153 aa26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 PNMA6FA0A0J9YX94 578 aa26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 POTEB2H3BUK9 544 aa26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 CCL5P13501 91 aa26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 PRKAR2AP13861 404 aaKnown RBP26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 TRAF1Q13077 416 aa26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 CCDC82Q8N4S0 544 aa26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 CLEC4DQ8WXI8 215 aa26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 IL17RAQ96F46 866 aa26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 CYP39A1Q9NYL5 469 aa26.48■■□□□ 1.83
CCDC28B-203ENST00000461819 PTPDC1A2A3K4 754 aa26.47■■□□□ 1.83
CCDC28B-203ENST00000461819 RNF208Q9H0X6 261 aa26.47■■□□□ 1.83
CCDC28B-203ENST00000461819 UNC93B1Q9H1C4 597 aa26.47■■□□□ 1.83
CCDC28B-203ENST00000461819 MRPL11Q9Y3B7 192 aaKnown RBP26.47■■□□□ 1.83
CCDC28B-203ENST00000461819 PCDHA1Q9Y5I3 950 aa26.47■■□□□ 1.83
CCDC28B-203ENST00000461819 PPP1R11O60927 126 aaPredicted RBP26.46■■□□□ 1.83
CCDC28B-203ENST00000461819 CYP2C19P33261 490 aa26.46■■□□□ 1.83
CCDC28B-203ENST00000461819 SOX10P56693 466 aa26.46■■□□□ 1.83
CCDC28B-203ENST00000461819 C22orf23Q9BZE7 217 aa26.46■■□□□ 1.83
CCDC28B-203ENST00000461819 CCDC196A0A1B0GTZ2 297 aa26.45■■□□□ 1.82
CCDC28B-203ENST00000461819 CNTN2Q02246 1040 aa26.45■■□□□ 1.82
CCDC28B-203ENST00000461819 CACNB2Q08289 660 aaPredicted RBP26.45■■□□□ 1.82
CCDC28B-203ENST00000461819 BAATQ14032 418 aaPredicted RBP26.45■■□□□ 1.82
CCDC28B-203ENST00000461819 PPP2R5BQ15173 497 aa26.45■■□□□ 1.82
CCDC28B-203ENST00000461819 SLC30A10Q6XR72 485 aa26.45■■□□□ 1.82
CCDC28B-203ENST00000461819 RNF207Q6ZRF8 634 aa26.45■■□□□ 1.82
CCDC28B-203ENST00000461819 HMX1Q9NP08 348 aaPredicted RBP26.45■■□□□ 1.82
CCDC28B-203ENST00000461819 NID2Q14112 1375 aa26.45■■□□□ 1.82
CCDC28B-203ENST00000461819 RPTORQ8N122 1335 aa26.44■■□□□ 1.82
CCDC28B-203ENST00000461819 CALML3P27482 149 aa26.44■■□□□ 1.82
CCDC28B-203ENST00000461819 CDC27P30260 824 aa26.44■■□□□ 1.82
CCDC28B-203ENST00000461819 MAP3K21Q5TCX8 1036 aa26.44■■□□□ 1.82
CCDC28B-203ENST00000461819 ZNF467Q7Z7K2 595 aaPredicted RBP26.44■■□□□ 1.82
CCDC28B-203ENST00000461819 MCF2L2Q86YR7 1114 aa26.44■■□□□ 1.82
CCDC28B-203ENST00000461819 FAM133AQ8N9E0 248 aa26.44■■□□□ 1.82
CCDC28B-203ENST00000461819 TINF2Q9BSI4 451 aa26.44■■□□□ 1.82
CCDC28B-203ENST00000461819 XRN2Q9H0D6 950 aaKnown RBP eCLIP26.44■■□□□ 1.82
CCDC28B-203ENST00000461819 CNTNAP5Q8WYK1 1306 aa26.43■■□□□ 1.82
CCDC28B-203ENST00000461819 PDIA3P30101 505 aaKnown RBP26.43■■□□□ 1.82
CCDC28B-203ENST00000461819 EVCP57679 992 aa26.43■■□□□ 1.82
CCDC28B-203ENST00000461819 LARP6Q9BRS8 491 aaKnown RBP26.43■■□□□ 1.82
CCDC28B-203ENST00000461819 KIAA0100Q14667 2235 aaKnown RBP26.42■■□□□ 1.82
CCDC28B-203ENST00000461819 FRMPD3Q5JV73 1810 aa26.42■■□□□ 1.82
CCDC28B-203ENST00000461819 hCG_1642624A0A1W2PR95 340 aa26.42■■□□□ 1.82
CCDC28B-203ENST00000461819 ADD1P35611 737 aaKnown RBP26.42■■□□□ 1.82
CCDC28B-203ENST00000461819 NEK4P51957 841 aa26.42■■□□□ 1.82
CCDC28B-203ENST00000461819 RPS6P62753 249 aaKnown RBP26.42■■□□□ 1.82
CCDC28B-203ENST00000461819 ANKRD1Q15327 319 aa26.42■■□□□ 1.82
CCDC28B-203ENST00000461819 MSL3Q8N5Y2 521 aaKnown RBP26.42■■□□□ 1.82
CCDC28B-203ENST00000461819 RGS22Q8NE09 1264 aa26.42■■□□□ 1.82
CCDC28B-203ENST00000461819 FAM217BQ9NTX9 383 aaPredicted RBP26.42■■□□□ 1.82
CCDC28B-203ENST00000461819 IGHA2P01877 340 aa26.41■■□□□ 1.82
CCDC28B-203ENST00000461819 CCT2P78371 535 aaKnown RBP26.41■■□□□ 1.82
CCDC28B-203ENST00000461819 ZNF274Q96GC6 653 aaPredicted RBP26.41■■□□□ 1.82
CCDC28B-203ENST00000461819 FGD4Q96M96 766 aa26.41■■□□□ 1.82
CCDC28B-203ENST00000461819 ALDH8A1Q9H2A2 487 aaPredicted RBP26.41■■□□□ 1.82
CCDC28B-203ENST00000461819 BRCA2P51587 3418 aa26.41■■□□□ 1.82
CCDC28B-203ENST00000461819 SYNGAP1Q96PV0 1343 aa26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 LRRC37A2A6NM11 1700 aa26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 POTEFA5A3E0 1075 aa26.4■■□□□ 1.82
CCDC28B-203ENST00000461819 SOWAHBA6NEL2 793 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms