RNA–Protein interactions for RNA: ENST00000461409.1

HDAC9-220, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 728 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-220ENST00000461409 CNPY2Q9Y2B0 182 aa10.34□□□□□ -0.75
HDAC9-220ENST00000461409 PCDHB15Q9Y5E8 787 aa10.34□□□□□ -0.75
HDAC9-220ENST00000461409 FRMPD3Q5JV73 1810 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 LAMA2P24043 3122 aaKnown RBP10.33□□□□□ -0.76
HDAC9-220ENST00000461409 IGKV6D-41A0A0C4DH26 115 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 ATP2A1O14983 1001 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 ACTN4O43707 911 aaKnown RBP10.33□□□□□ -0.76
HDAC9-220ENST00000461409 ZBED4O75132 1171 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 PRDM1O75626 825 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 PGK2P07205 417 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 TSPY3P0CV98 308 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 TSPY8P0CW00 308 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 RRP1P56182 461 aaKnown RBP10.33□□□□□ -0.76
HDAC9-220ENST00000461409 RTP1P59025 263 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 COPS2P61201 443 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 ZNF792Q3KQV3 632 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 ZMYM1Q5SVZ6 1142 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 IFNL3Q8IZI9 196 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 GMCL1P1Q8NEA9 526 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 REPS2Q8NFH8 660 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 MKL1Q969V6 931 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 CEP95Q96GE4 821 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 NUP88Q99567 741 aaPredicted RBP10.33□□□□□ -0.76
HDAC9-220ENST00000461409 NAPBQ9H115 298 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 MTMR4Q9NYA4 1195 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 FEM1BQ9UK73 627 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 PCDHB3Q9Y5E6 796 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 PLIN4Q96Q06 1357 aa10.33□□□□□ -0.76
HDAC9-220ENST00000461409 FDX1P10109 184 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 AKR1A1P14550 325 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 OAZ1P54368 228 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 MDM2Q00987 491 aaPredicted RBP10.32□□□□□ -0.76
HDAC9-220ENST00000461409 LRRC41Q15345 812 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 KMT5BQ4FZB7 885 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 FAM47AQ5JRC9 791 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 PRAMEF19Q5SWL8 479 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 ANO1Q5XXA6 986 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 SLC39A5Q6ZMH5 540 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 RNF180Q86T96 592 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 NEDD1Q8NHV4 660 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 DDX11Q96FC9 970 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 XPNPEP3Q9NQH7 507 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 FBXO40Q9UH90 709 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 ATP11BQ9Y2G3 1177 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 GREB1LQ9C091 1923 aaPredicted RBP10.32□□□□□ -0.76
HDAC9-220ENST00000461409 PARP14Q460N5 1801 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 A0A0C4DFX4 3053 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 SYNGAP1Q96PV0 1343 aa10.32□□□□□ -0.76
HDAC9-220ENST00000461409 COL6A3P12111 3177 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 ADCYAP1R1P41586 468 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 TFAP4Q01664 338 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 PPARAQ07869 468 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 SNX17Q15036 470 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 C1orf53Q5VUE5 145 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 TICAM2Q86XR7 235 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 CPXCR1Q8N123 301 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 LRRC47Q8N1G4 583 aaKnown RBP10.31□□□□□ -0.76
HDAC9-220ENST00000461409 DEFB123Q8N688 67 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 OTUD7AQ8TE49 926 aaPredicted RBP10.31□□□□□ -0.76
HDAC9-220ENST00000461409 KIFC2Q96AC6 838 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 SEC62Q99442 399 aaKnown RBP10.31□□□□□ -0.76
HDAC9-220ENST00000461409 SLC38A10Q9HBR0 1119 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 ISY1Q9ULR0 285 aaKnown RBP10.31□□□□□ -0.76
HDAC9-220ENST00000461409 PHF24Q9UPV7 400 aa10.31□□□□□ -0.76
HDAC9-220ENST00000461409 DNAJC25-GNG10A0A024R161 153 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 GFRA3O60609 400 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 ZNF865P0CJ78 1059 aaPredicted RBP10.3□□□□□ -0.76
HDAC9-220ENST00000461409 BMP3P12645 472 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 STAT2P52630 851 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 IKQ13123 557 aaPredicted RBP10.3□□□□□ -0.76
HDAC9-220ENST00000461409 TRIM60Q495X7 471 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 ANKRD45Q5TZF3 282 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 SLFN13Q68D06 897 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 BLOC1S3Q6QNY0 202 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 MAMDC4Q6UXC1 1216 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 FAM160B2Q86V87 743 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 ANKRD35Q8N283 1001 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 CHST13Q8NET6 341 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 CHURC1Q8WUH1 139 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 FERMT2Q96AC1 680 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 EVI5LQ96CN4 794 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 GMCL1Q96IK5 515 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 PRDM5Q9NQX1 630 aaPredicted RBP10.3□□□□□ -0.76
HDAC9-220ENST00000461409 FAM184BQ9ULE4 1060 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 RIPK3Q9Y572 518 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 COL11A1P12107 1806 aaPredicted RBP10.3□□□□□ -0.76
HDAC9-220ENST00000461409 SALL3Q9BXA9 1300 aa10.3□□□□□ -0.76
HDAC9-220ENST00000461409 TSPY2A6NKD2 308 aa10.29□□□□□ -0.76
HDAC9-220ENST00000461409 PGK1P00558 417 aa10.29□□□□□ -0.76
HDAC9-220ENST00000461409 TAL1P17542 331 aaPredicted RBP10.29□□□□□ -0.76
HDAC9-220ENST00000461409 SLC1A4P43007 532 aa10.29□□□□□ -0.76
HDAC9-220ENST00000461409 HDAC1Q13547 482 aaPredicted RBP10.29□□□□□ -0.76
HDAC9-220ENST00000461409 AAMPQ13685 434 aa10.29□□□□□ -0.76
HDAC9-220ENST00000461409 NUP133Q8WUM0 1156 aa10.29□□□□□ -0.76
HDAC9-220ENST00000461409 TSEN34Q9BSV6 310 aaKnown RBP10.29□□□□□ -0.76
HDAC9-220ENST00000461409 RAVER2Q9HCJ3 691 aaKnown RBP10.29□□□□□ -0.76
HDAC9-220ENST00000461409 STX8Q9UNK0 236 aa10.29□□□□□ -0.76
HDAC9-220ENST00000461409 A0A1W2PQ45 241 aaPredicted RBP10.28□□□□□ -0.76
HDAC9-220ENST00000461409 A0A1W2PQY0 241 aa10.28□□□□□ -0.76
HDAC9-220ENST00000461409 MOXD2PA6NHM9 499 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms