RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 MTF1Q14872 753 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 LRRC41Q15345 812 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 GALNT17Q6IS24 598 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 MASTLQ96GX5 879 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 NUP58Q9BVL2 599 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 EPC1Q9H2F5 836 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 CALCOCO1Q9P1Z2 691 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 SALL1Q9NSC2 1324 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 TCRBV5S4A2TA0A5A2 114 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 H0YHG0 523 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 IBSPP21815 317 aaPredicted RBP12.95□□□□□ -0.34
NPHP4-204ENST00000460696 NF2P35240 595 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 MAPK8IP2Q13387 824 aaPredicted RBP12.95□□□□□ -0.34
NPHP4-204ENST00000460696 GPR161Q8N6U8 529 aaKnown RBP12.95□□□□□ -0.34
NPHP4-204ENST00000460696 DISC1Q9NRI5 854 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 CDR1P51861 262 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 KMT5BQ4FZB7 885 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 IRX2Q9BZI1 471 aaPredicted RBP12.95□□□□□ -0.34
NPHP4-204ENST00000460696 CD209Q9NNX6 404 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 ZBTB21Q9ULJ3 1066 aa12.95□□□□□ -0.34
NPHP4-204ENST00000460696 CAPN2P17655 700 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 TOB1P50616 345 aaPredicted RBP12.94□□□□□ -0.34
NPHP4-204ENST00000460696 RCAN1P53805 252 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 VGLL2Q8N8G2 317 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 CNOT6LQ96LI5 555 aaKnown RBP12.94□□□□□ -0.34
NPHP4-204ENST00000460696 FAM13AO94988 1023 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 ADRA2BP18089 450 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 TBC1D10BQ4KMP7 808 aaPredicted RBP12.94□□□□□ -0.34
NPHP4-204ENST00000460696 C3orf67Q6ZVT6 689 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 HDXQ7Z353 690 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 TSPYL1Q9H0U9 437 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 GPBP1L1Q9HC44 474 aaPredicted RBP12.94□□□□□ -0.34
NPHP4-204ENST00000460696 SERPINB13Q9UIV8 391 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.94□□□□□ -0.34
NPHP4-204ENST00000460696 PRCPP42785 496 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 TROAPQ12815 778 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 DLGAP5Q15398 846 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 TMEM132AQ24JP5 1023 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 SECISBP2LQ93073 1101 aaKnown RBP12.94□□□□□ -0.34
NPHP4-204ENST00000460696 PHF20Q9BVI0 1012 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 PLEKHA4Q9H4M7 779 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 BCCIPQ9P287 314 aaKnown RBP eCLIP12.94□□□□□ -0.34
NPHP4-204ENST00000460696 ABT1Q9ULW3 272 aaKnown RBP12.94□□□□□ -0.34
NPHP4-204ENST00000460696 MYO6Q9UM54 1294 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 PHLPP2Q6ZVD8 1323 aa12.94□□□□□ -0.34
NPHP4-204ENST00000460696 ROBO1Q9Y6N7 1651 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 CETN3O15182 167 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 ERLIN2O94905 339 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 CFBP00751 764 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 NPR1P16066 1061 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 CLCN6P51797 869 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 CACNB1Q02641 598 aaPredicted RBP12.93□□□□□ -0.34
NPHP4-204ENST00000460696 IFIH1Q9BYX4 1025 aaKnown RBP12.93□□□□□ -0.34
NPHP4-204ENST00000460696 FAM217BQ9NTX9 383 aaPredicted RBP12.93□□□□□ -0.34
NPHP4-204ENST00000460696 RWDD2AQ9UIY3 292 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 PCDHA1Q9Y5I3 950 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 TCP10L2B9ZVM9 353 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 OAS2P29728 719 aaKnown RBP12.93□□□□□ -0.34
NPHP4-204ENST00000460696 UBE2SQ16763 222 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 DNAJC21Q5F1R6 531 aaKnown RBP12.93□□□□□ -0.34
NPHP4-204ENST00000460696 ARL6IP4Q66PJ3 421 aaKnown RBP12.93□□□□□ -0.34
NPHP4-204ENST00000460696 CCDC84Q86UT8 332 aaPredicted RBP12.93□□□□□ -0.34
NPHP4-204ENST00000460696 TXNRD3Q86VQ6 643 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 IFT81Q8WYA0 676 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 MAP3K14Q99558 947 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 BEGAINQ9BUH8 593 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 NBPF3Q9H094 633 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 SAR1BQ9Y6B6 198 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 PLSCR1O15162 318 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 ORC4O43929 436 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 CACNB3P54284 484 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 PRR16Q569H4 304 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 C12orf60Q5U649 245 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 MAEAQ7L5Y9 396 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 CEP95Q96GE4 821 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 DDX25Q9UHL0 483 aaKnown RBP12.93□□□□□ -0.34
NPHP4-204ENST00000460696 CDC23Q9UJX2 597 aa12.93□□□□□ -0.34
NPHP4-204ENST00000460696 USP17L5A8MUK1 530 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 SETD1AO15047 1707 aaKnown RBP12.92□□□□□ -0.34
NPHP4-204ENST00000460696 MFAP3LO75121 409 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 BBOX1O75936 387 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 ATP2C1P98194 919 aaPredicted RBP12.92□□□□□ -0.34
NPHP4-204ENST00000460696 CYP27A1Q02318 531 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 SMC1AQ14683 1233 aaKnown RBP12.92□□□□□ -0.34
NPHP4-204ENST00000460696 TCP11X2Q5H9J9 407 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 P2RX5Q93086 422 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 EHMT1Q9H9B1 1298 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 FAM208AQ9UK61 1670 aaKnown RBP12.92□□□□□ -0.34
NPHP4-204ENST00000460696 SSR1P43307 286 aaKnown RBP12.92□□□□□ -0.34
NPHP4-204ENST00000460696 CYP4A11Q02928 519 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 HS2ST1Q7LGA3 356 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 FOXP4Q8IVH2 680 aaPredicted RBP12.92□□□□□ -0.34
NPHP4-204ENST00000460696 MYOCDQ8IZQ8 938 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 LARP4BQ92615 738 aaKnown RBP12.92□□□□□ -0.34
NPHP4-204ENST00000460696 HPSEQ9Y251 543 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 ZBTB12Q9Y330 459 aaPredicted RBP12.92□□□□□ -0.34
NPHP4-204ENST00000460696 GABPB1Q06547 395 aaPredicted RBP12.92□□□□□ -0.34
NPHP4-204ENST00000460696 HAUS3Q68CZ6 603 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 STXBP4Q6ZWJ1 553 aa12.92□□□□□ -0.34
NPHP4-204ENST00000460696 FBXO33Q7Z6M2 555 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms