RNA–Protein interactions for RNA: ENST00000457942.1

CHCHD3-204, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 4

Gene CHCHD3, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-204ENST00000457942 REV3LO60673 3130 aa18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 ZMYM6O95789 1325 aa18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 DNAJC25-GNG10A0A024R161 153 aa18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 TIMP1P01033 207 aa18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 ALAS1P13196 640 aa18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 CSF2RAP15509 400 aa18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 SNAP25P60880 206 aa18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 ZNF467Q7Z7K2 595 aaPredicted RBP18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 TICAM2Q86XR7 235 aa18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 AGBL1Q96MI9 1066 aa18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.57■□□□□ 0.56
CHCHD3-204ENST00000457942 SNAI1O95863 264 aaPredicted RBP18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 IGHDP01880 384 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 SDSP20132 328 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 NUCB1Q02818 461 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 ACVR2BQ13705 512 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 KCNA10Q16322 511 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 TKFCQ3LXA3 575 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 MAMDC4Q6UXC1 1216 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 MFSD6Q6ZSS7 791 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 ARMCX2Q7L311 632 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 ANKRD33Q7Z3H0 272 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 PLEKHM2Q8IWE5 1019 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 MICALL1Q8N3F8 863 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 NUP133Q8WUM0 1156 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 DCAF4Q8WV16 495 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 VTI1AQ96AJ9 217 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 TRERF1Q96PN7 1200 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 UHRF1Q96T88 793 aaPredicted RBP18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 TBX21Q9UL17 535 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 PRR12Q9ULL5 1215 aa18.56■□□□□ 0.56
CHCHD3-204ENST00000457942 CHD7Q9P2D1 2997 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 XIRP2A4UGR9 3374 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 TOP1P11387 765 aaKnown RBP18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 ADGRE1Q14246 886 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 TMEM240Q5SV17 173 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 MFSD5Q6N075 450 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 CWC27Q6UX04 472 aaKnown RBP18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 C16orf59Q7L2K0 433 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 IL27Q8NEV9 243 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 NECAB3Q96P71 396 aaPredicted RBP18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 ASB2Q96Q27 587 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 NKX2-4Q9H2Z4 354 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 ABHD16BQ9H3Z7 469 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 SPC25Q9HBM1 224 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 CCPG1Q9ULG6 757 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 BDP1A6H8Y1 2624 aa18.55■□□□□ 0.56
CHCHD3-204ENST00000457942 ZNF536O15090 1300 aa18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 FRMPD2Q68DX3 1309 aaPredicted RBP18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 LAMA4Q16363 1823 aa18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 ADCY6O43306 1168 aa18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 PLA2G6O60733 806 aa18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 FGRP09769 529 aa18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 C6orf222P0C671 652 aaPredicted RBP18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 CNTN2Q02246 1040 aa18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 PPIGQ13427 754 aaKnown RBP eCLIP18.54■□□□□ 0.566e-6■■□□□ 12.9
CHCHD3-204ENST00000457942 CCDC144CPQ8IYA2 1237 aa18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 ATXN2LQ8WWM7 1075 aaKnown RBP18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 RNF41Q9H4P4 317 aaPredicted RBP18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 GPCPD1Q9NPB8 672 aa18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 A1CFQ9NQ94 594 aaKnown RBP18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 GBF1Q92538 1859 aa18.54■□□□□ 0.56
CHCHD3-204ENST00000457942 HIP1O00291 1037 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 DUSP11O75319 330 aaKnown RBP18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 SLC16A2P36021 539 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 CCDC144BQ3MJ40 725 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 AKNAD1Q5T1N1 836 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 NSMFQ6X4W1 530 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 ZNF365Q70YC5 407 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 NOL8Q76FK4 1167 aaKnown RBP18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 TBC1D10CQ8IV04 446 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 FGD4Q96M96 766 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 GLT1D1Q96MS3 346 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 TOX2Q96NM4 488 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 TMEM47Q9BQJ4 181 aa18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 TSEN34Q9BSV6 310 aaKnown RBP18.53■□□□□ 0.56
CHCHD3-204ENST00000457942 MOXD2PA6NHM9 499 aa18.52■□□□□ 0.56
CHCHD3-204ENST00000457942 ZNF213O14771 459 aa18.52■□□□□ 0.56
CHCHD3-204ENST00000457942 ASGR1P07306 291 aa18.52■□□□□ 0.56
CHCHD3-204ENST00000457942 PCP11498 1178 aaKnown RBP18.52■□□□□ 0.56
CHCHD3-204ENST00000457942 SYDE2Q5VT97 1194 aa18.52■□□□□ 0.56
CHCHD3-204ENST00000457942 TTBK2Q6IQ55 1244 aa18.52■□□□□ 0.56
CHCHD3-204ENST00000457942 KLHDC9Q8NEP7 349 aa18.52■□□□□ 0.56
CHCHD3-204ENST00000457942 OSBPL3Q9H4L5 887 aa18.52■□□□□ 0.56
CHCHD3-204ENST00000457942 TCP11L1Q9NUJ3 509 aa18.52■□□□□ 0.56
CHCHD3-204ENST00000457942 CXXC1Q9P0U4 656 aaPredicted RBP18.52■□□□□ 0.56
CHCHD3-204ENST00000457942 ASB14A6NK59 587 aa18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 ICAM1P05362 532 aa18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 CYP2C18P33260 490 aa18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 PLA2G5P39877 138 aa18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 MRPS5P82675 430 aaKnown RBP18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 MUM1L1Q5H9M0 696 aa18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 CCSAPQ6IQ19 270 aaPredicted RBP18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 PSRC1Q6PGN9 363 aaPredicted RBP18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 TMEM199Q8N511 208 aa18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 FAM133AQ8N9E0 248 aa18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 ESR2Q92731 530 aa18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 YBX2Q9Y2T7 364 aaKnown RBP18.51■□□□□ 0.55
CHCHD3-204ENST00000457942 SUPT16HQ9Y5B9 1047 aaKnown RBP18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms