RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 USP17L22D6RA61 530 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 USP17L17D6RBQ6 530 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 USP17L19D6RCP7 530 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 USP17L20D6RJB6 530 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 H3BQV1 296 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 VWA5AO00534 786 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 PDCP20941 246 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 NUCB2P80303 420 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 USP17L24Q0WX57 530 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 SNAPC2Q13487 334 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 IFFO2Q5TF58 517 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 MCTP1Q6DN14 999 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 RGMBQ6NW40 437 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 CPXCR1Q8N123 301 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 FAM43AQ8N2R8 423 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 PROCA1Q8NCQ7 364 aaPredicted RBP12.65□□□□□ -0.38
SCN9A-205ENST00000454569 RASGRP4Q8TDF6 673 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 WASF1Q92558 559 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 SLC38A10Q9HBR0 1119 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 RAVER2Q9HCJ3 691 aaKnown RBP12.65□□□□□ -0.38
SCN9A-205ENST00000454569 SEC63Q9UGP8 760 aaKnown RBP12.65□□□□□ -0.38
SCN9A-205ENST00000454569 RIPK3Q9Y572 518 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 DOCK3Q8IZD9 2030 aa12.65□□□□□ -0.38
SCN9A-205ENST00000454569 WDR33Q9C0J8 1336 aaKnown RBP12.65□□□□□ -0.38
SCN9A-205ENST00000454569 CCL15-CCL14A0A0B4J2E2 113 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 BTBD19C9JJ37 291 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 M0R2N6 131 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 HOXA7P31268 230 aaPredicted RBP12.64□□□□□ -0.39
SCN9A-205ENST00000454569 NAPAP54920 295 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 HTRA3P83110 453 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 FSTL1Q12841 308 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 COG2Q14746 738 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 CCL15Q16663 113 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 FBXO11Q86XK2 927 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 DIS3L2Q8IYB7 885 aaKnown RBP12.64□□□□□ -0.39
SCN9A-205ENST00000454569 TNFRSF25Q93038 417 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 ASCC2Q9H1I8 757 aaPredicted RBP12.64□□□□□ -0.39
SCN9A-205ENST00000454569 TMEM260Q9NX78 707 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 BTBD7Q9P203 1132 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 ABT1Q9ULW3 272 aaKnown RBP12.64□□□□□ -0.39
SCN9A-205ENST00000454569 AGTPBP1Q9UPW5 1226 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 PCDHA1Q9Y5I3 950 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 RBBP6Q7Z6E9 1792 aaKnown RBP12.64□□□□□ -0.39
SCN9A-205ENST00000454569 SMCO2A6NFE2 343 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 CNMDO75829 334 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 SLC10A3P09131 477 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 CYP2C8P10632 490 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 NLRP5P59047 1200 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 TMEM132BQ14DG7 1078 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 CYP4F22Q6NT55 531 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 FTOQ9C0B1 505 aaKnown RBP eCLIP12.64□□□□□ -0.39
SCN9A-205ENST00000454569 ZMYND12Q9H0C1 365 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 RBM27Q9P2N5 1060 aaKnown RBP12.64□□□□□ -0.39
SCN9A-205ENST00000454569 KIF3AQ9Y496 699 aa12.64□□□□□ -0.39
SCN9A-205ENST00000454569 IGF2BP3O00425 579 aaKnown RBP eCLIP12.63□□□□□ -0.39
SCN9A-205ENST00000454569 WNT7AO00755 349 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 ZBTB48P10074 688 aaPredicted RBP12.63□□□□□ -0.39
SCN9A-205ENST00000454569 U2AF2P26368 475 aaKnown RBP eCLIP12.63□□□□□ -0.39
SCN9A-205ENST00000454569 GTF2A2P52657 109 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 MFSD10Q14728 455 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 UBE2SQ16763 222 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 MUM1L1Q5H9M0 696 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 AMNQ9BXJ7 453 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 CRISPLD2Q9H0B8 497 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 TXNRD2Q9NNW7 524 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 SH3GLB2Q9NR46 395 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 ZNF214Q9UL59 606 aaPredicted RBP12.63□□□□□ -0.39
SCN9A-205ENST00000454569 PCDHA6Q9UN73 950 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 PCDHA8Q9Y5H6 950 aa12.63□□□□□ -0.39
SCN9A-205ENST00000454569 PDHXO00330 501 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 EDIL3O43854 480 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 CETPP11597 493 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 DNM1Q05193 864 aaKnown RBP12.62□□□□□ -0.39
SCN9A-205ENST00000454569 GRM1Q13255 1194 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 TRIM29Q14134 588 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 Q3C1V9 767 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 USP17L6PQ6QN14 398 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 FASTKD5Q7L8L6 764 aaKnown RBP12.62□□□□□ -0.39
SCN9A-205ENST00000454569 BLIDQ8IZY5 108 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 CLEC4DQ8WXI8 215 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 PGBD1Q96JS3 809 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 TFIP11Q9UBB9 837 aaKnown RBP12.62□□□□□ -0.39
SCN9A-205ENST00000454569 RBPJLQ9UBG7 517 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 BIN2Q9UBW5 565 aaPredicted RBP12.62□□□□□ -0.39
SCN9A-205ENST00000454569 PCDHA4Q9UN74 947 aa12.62□□□□□ -0.39
SCN9A-205ENST00000454569 TESPA1A2RU30 521 aaPredicted RBP12.61□□□□□ -0.39
SCN9A-205ENST00000454569 MEIS2O14770 477 aa12.61□□□□□ -0.39
SCN9A-205ENST00000454569 ICAM1P05362 532 aa12.61□□□□□ -0.39
SCN9A-205ENST00000454569 TOB1P50616 345 aaPredicted RBP12.61□□□□□ -0.39
SCN9A-205ENST00000454569 HERVK_113P62684 666 aa12.61□□□□□ -0.39
SCN9A-205ENST00000454569 LBX2Q6XYB7 198 aa12.61□□□□□ -0.39
SCN9A-205ENST00000454569 HOMER2Q9NSB8 354 aa12.61□□□□□ -0.39
SCN9A-205ENST00000454569 HOXC10Q9NYD6 342 aa12.61□□□□□ -0.39
SCN9A-205ENST00000454569 CCPG1Q9ULG6 757 aa12.61□□□□□ -0.39
SCN9A-205ENST00000454569 NFIBO00712 420 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 AOC2O75106 756 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 ZBED4O75132 1171 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 BAG4O95429 457 aaKnown RBP12.6□□□□□ -0.39
SCN9A-205ENST00000454569 ALAS1P13196 640 aa12.6□□□□□ -0.39
SCN9A-205ENST00000454569 KRT2P35908 639 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms