RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, human

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00339-205	ENST00000452322	SSRP1	Q08945	709 aa	Known RBP	13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	ARHGEF6	Q15052	776 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	PFKFB3	Q16875	520 aa	Predicted RBP	13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	WDR78	Q5VTH9	848 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	GPR142	Q7Z601	462 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	ZNF713	Q8N859	430 aa	Predicted RBP	13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	CD99L2	Q8TCZ2	262 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	TRERF1	Q96PN7	1200 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	LLPH	Q9BRT6	129 aa	Known RBP	13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	ARHGAP39	Q9C0H5	1083 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	ACAD9	Q9H845	621 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	CWC22	Q9HCG8	908 aa	Known RBP	13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	PCDHA1	Q9Y5I3	950 aa		13.74	□□□□□ -0.21
LINC00339-205	ENST00000452322	ZSWIM8	A7E2V4	1837 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	ZNF236	Q9UL36	1845 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	TNPO2	O14787	897 aa	Known RBP	13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	STRN	O43815	780 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	GNRH1	P01148	92 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	SCG2	P13521	617 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	TAL1	P17542	331 aa	Predicted RBP	13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	LBX1	P52954	281 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	PKN1	Q16512	942 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	PLEKHH3	Q7Z736	793 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	ABRA	Q8N0Z2	381 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	NSUN7	Q8NE18	718 aa	Known RBP	13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	TRIM47	Q96LD4	638 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	MAF1	Q9H063	256 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	HOMER2	Q9NSB8	354 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	MRPL11	Q9Y3B7	192 aa	Known RBP	13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	IVNS1ABP	Q9Y6Y0	642 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	SMCHD1	A6NHR9	2005 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	PLXNB2	O15031	1838 aa		13.73	□□□□□ -0.21
LINC00339-205	ENST00000452322	PTPDC1	A2A3K4	754 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322		K7ELQ4	463 aa	Predicted RBP	13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	PPFIA3	O75145	1194 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	PTPRE	P23469	700 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	CAP1	Q01518	475 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	GRB14	Q14449	540 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	MUM1L1	Q5H9M0	696 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	WWC2	Q6AWC2	1192 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	PPP1R18	Q6NYC8	613 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	HEATR3	Q7Z4Q2	680 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	HSCB	Q8IWL3	235 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	SMARCC2	Q8TAQ2	1214 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	SOCS4	Q8WXH5	440 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	CLEC4D	Q8WXI8	215 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	COA7	Q96BR5	231 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	BARHL2	Q9NY43	387 aa		13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.72	□□□□□ -0.21
LINC00339-205	ENST00000452322	SLC15A5	A6NIM6	579 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	NFIB	O00712	420 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	JAK2	O60674	1132 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	ECM2	O94769	699 aa	Predicted RBP	13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	FCER1A	P12319	257 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	HOXD10	P28358	340 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	CUL4A	Q13619	759 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	KCTD2	Q14681	263 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	MCF2L2	Q86YR7	1114 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	RGS22	Q8NE09	1264 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	WASF1	Q92558	559 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	MMP19	Q99542	508 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	A1CF	Q9NQ94	594 aa	Known RBP	13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	ORC3	Q9UBD5	711 aa	Predicted RBP	13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	CASP8AP2	Q9UKL3	1982 aa		13.71	□□□□□ -0.21
LINC00339-205	ENST00000452322	PFAS	O15067	1338 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	STXBP3	O00186	592 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	OPLAH	O14841	1288 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	FDPS	P14324	419 aa	Known RBP	13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	NAPA	P54920	295 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	PRMT2	P55345	433 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	HMGN5	P82970	282 aa	Known RBP	13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	GHRHR	Q02643	423 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	MORN1	Q5T089	497 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	FAM177A1	Q8N128	213 aa	Predicted RBP	13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	ANKRD35	Q8N283	1001 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	SAMD3	Q8N6K7	520 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	NUDT12	Q9BQG2	462 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	PRDM10	Q9NQV6	1147 aa		13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	MAP3K20	Q9NYL2	800 aa	Known RBP	13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.71	□□□□□ -0.22
LINC00339-205	ENST00000452322	DOCK3	Q8IZD9	2030 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	ADORA2A	P29274	412 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	MAP2K5	Q13163	448 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	TYW1B	Q6NUM6	668 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	NSMF	Q6X4W1	530 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	PPP4R3CP	Q6ZMV5	832 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	RNF207	Q6ZRF8	634 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	OTOP1	Q7RTM1	612 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	TEX2	Q8IWB9	1127 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	CCDC148	Q8NFR7	591 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	USP6NL	Q92738	828 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	DDX11	Q96FC9	970 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	RNF39	Q9H2S5	420 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	SH3GLB2	Q9NR46	395 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	CYP39A1	Q9NYL5	469 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	SRRD	Q9UH36	339 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	GJD2	Q9UKL4	321 aa		13.7	□□□□□ -0.22
LINC00339-205	ENST00000452322	TRIM17	Q9Y577	477 aa		13.7	□□□□□ -0.22

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