RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 PICK1Q9NRD5 415 aa16.21■□□□□ 0.19
USP39-207ENST00000450066 GRIN3BO60391 1043 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 LONP1P36776 959 aaKnown RBP16.2■□□□□ 0.18
USP39-207ENST00000450066 USP14P54578 494 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 IL17AQ16552 155 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 USH1GQ495M9 461 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 LONRF3Q496Y0 759 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 KRBA2Q6ZNG9 492 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 USP49Q70CQ1 688 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 KIFC2Q96AC6 838 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 AS3MTQ9HBK9 375 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 KIAA1468Q9P260 1216 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 POLR2DO15514 142 aaKnown RBP16.2■□□□□ 0.18
USP39-207ENST00000450066 CAVIN2O95810 425 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 PTPRAP18433 802 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 DTHD1Q6ZMT9 781 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 SULF1Q8IWU6 871 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 SYMPKQ92797 1274 aaKnown RBP16.2■□□□□ 0.18
USP39-207ENST00000450066 EPSTI1Q96J88 318 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 TMEM60Q9H2L4 133 aa16.2■□□□□ 0.18
USP39-207ENST00000450066 NEMFO60524 1076 aa16.19■□□□□ 0.18
USP39-207ENST00000450066 AP3B2Q13367 1082 aa16.19■□□□□ 0.18
USP39-207ENST00000450066 NOL9Q5SY16 702 aaKnown RBP16.19■□□□□ 0.18
USP39-207ENST00000450066 USP50Q70EL3 339 aaPredicted RBP16.19■□□□□ 0.18
USP39-207ENST00000450066 CNNM3Q8NE01 707 aa16.19■□□□□ 0.18
USP39-207ENST00000450066 USP17L15C9J2P7 530 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 USP17L13C9JLJ4 530 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 USP17L11C9JVI0 530 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 USP17L18D6R9N7 530 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 USP17L22D6RA61 530 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 USP17L17D6RBQ6 530 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 USP17L19D6RCP7 530 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 USP17L20D6RJB6 530 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 MEIS2O14770 477 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 USP17L24Q0WX57 530 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 MTMR2Q13614 643 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 UVSSAQ2YD98 709 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 USP17L6PQ6QN14 398 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 ZNF280CQ8ND82 737 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 FBXO28Q9NVF7 368 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 HOOK1Q9UJC3 728 aaKnown RBP16.18■□□□□ 0.18
USP39-207ENST00000450066 POLR2AP24928 1970 aaKnown RBP16.18■□□□□ 0.18
USP39-207ENST00000450066 GLTPD2A6NH11 291 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 EDIL3O43854 480 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 OR52Z1P0C646 297 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 BACE1P56817 501 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 SPP2Q13103 211 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 STX1AQ16623 288 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 ANO6Q4KMQ2 910 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 PPP4R3AQ6IN85 833 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 KANK3Q6NY19 840 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 PRPF38AQ8NAV1 312 aaKnown RBP16.18■□□□□ 0.18
USP39-207ENST00000450066 FAM200AQ8TCP9 573 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 ZC3H15Q8WU90 426 aaKnown RBP16.18■□□□□ 0.18
USP39-207ENST00000450066 ANP32BQ92688 251 aaKnown RBP16.18■□□□□ 0.18
USP39-207ENST00000450066 EMILIN3Q9NT22 766 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 FZD1Q9UP38 647 aa16.18■□□□□ 0.18
USP39-207ENST00000450066 PIK3CDO00329 1044 aa16.17■□□□□ 0.18
USP39-207ENST00000450066 OPLAHO14841 1288 aa16.17■□□□□ 0.18
USP39-207ENST00000450066 USP2O75604 605 aaPredicted RBP16.17■□□□□ 0.18
USP39-207ENST00000450066 FOSP01100 380 aaPredicted RBP16.17■□□□□ 0.18
USP39-207ENST00000450066 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.17■□□□□ 0.183e-6■□□□□ 9.8
USP39-207ENST00000450066 ERCC4Q92889 916 aaPredicted RBP16.17■□□□□ 0.18
USP39-207ENST00000450066 NAP1L4Q99733 375 aaKnown RBP16.17■□□□□ 0.18
USP39-207ENST00000450066 SLF1Q9BQI6 1058 aa16.17■□□□□ 0.18
USP39-207ENST00000450066 PYM1Q9BRP8 204 aaKnown RBP16.17■□□□□ 0.18
USP39-207ENST00000450066 ACTN4O43707 911 aaKnown RBP16.17■□□□□ 0.18
USP39-207ENST00000450066 GCFC2P16383 781 aaKnown RBP16.17■□□□□ 0.18
USP39-207ENST00000450066 VCAM1P19320 739 aa16.17■□□□□ 0.18
USP39-207ENST00000450066 EPHX2P34913 555 aa16.17■□□□□ 0.18
USP39-207ENST00000450066 MDM2Q00987 491 aaPredicted RBP16.17■□□□□ 0.18
USP39-207ENST00000450066 CCDC174Q6PII3 467 aa16.17■□□□□ 0.18
USP39-207ENST00000450066 PDILTQ8N807 584 aa16.17■□□□□ 0.18
USP39-207ENST00000450066 ANO10Q9NW15 660 aa16.17■□□□□ 0.18
USP39-207ENST00000450066 USP25Q9UHP3 1055 aa16.17■□□□□ 0.18
USP39-207ENST00000450066 ZHX2Q9Y6X8 837 aa16.17■□□□□ 0.18
USP39-207ENST00000450066 ADM5C9JUS6 153 aa16.16■□□□□ 0.18
USP39-207ENST00000450066 USP11P51784 963 aa16.16■□□□□ 0.18
USP39-207ENST00000450066 KRT26Q7Z3Y9 468 aa16.16■□□□□ 0.18
USP39-207ENST00000450066 CCDC34Q96HJ3 373 aa16.16■□□□□ 0.18
USP39-207ENST00000450066 ANO3Q9BYT9 981 aa16.16■□□□□ 0.18
USP39-207ENST00000450066 SERTAD1Q9UHV2 236 aa16.16■□□□□ 0.18
USP39-207ENST00000450066 TUBE1Q9UJT0 475 aa16.16■□□□□ 0.18
USP39-207ENST00000450066 A0A087X0B3 334 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 C19orf81C9J6K1 198 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 TDP2O95551 362 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 SLFN14P0C7P3 912 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 TXLNAP40222 546 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 ZRSR1Q15695 479 aaKnown RBP16.15■□□□□ 0.18
USP39-207ENST00000450066 POTEDQ86YR6 584 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 C12orf42Q96LP6 360 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 AK8Q96MA6 479 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 MTMR9Q96QG7 549 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 TANGO6Q9C0B7 1094 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 MRPL11Q9Y3B7 192 aaKnown RBP16.15■□□□□ 0.18
USP39-207ENST00000450066 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.15■□□□□ 0.18
USP39-207ENST00000450066 PPP1R12BO60237 982 aaPredicted RBP16.15■□□□□ 0.18
USP39-207ENST00000450066 ICAM1P05362 532 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 PNOCQ13519 176 aa16.15■□□□□ 0.18
USP39-207ENST00000450066 DGKZQ13574 1117 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms