RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 MMP19Q99542 508 aa17.05■□□□□ 0.32
USP39-206ENST00000448971 SEMA6BQ9H3T3 888 aa17.05■□□□□ 0.32
USP39-206ENST00000448971 GPCPD1Q9NPB8 672 aa17.05■□□□□ 0.32
USP39-206ENST00000448971 SPTBN5Q9NRC6 3674 aaKnown RBP17.05■□□□□ 0.32
USP39-206ENST00000448971 TRIM43BA6NCK2 446 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 KBTBD13C9JR72 458 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 FCER1AP12319 257 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 SLC16A2P36021 539 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 ADCYAP1R1P41586 468 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 OAZ1P54368 228 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 ZNF543Q08ER8 600 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 KCTD2Q14681 263 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 LRRC41Q15345 812 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 TRIM60Q495X7 471 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 CREB3L3Q68CJ9 461 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 CCDC174Q6PII3 467 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 SH3RF1Q7Z6J0 888 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 BADQ92934 168 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 TRIM43Q96BQ3 446 aaPredicted RBP17.04■□□□□ 0.32
USP39-206ENST00000448971 MAML3Q96JK9 1138 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 CDX2Q99626 313 aaPredicted RBP17.04■□□□□ 0.32
USP39-206ENST00000448971 PRR12Q9ULL5 1215 aa17.04■□□□□ 0.32
USP39-206ENST00000448971 IFIT3O14879 490 aaKnown RBP17.03■□□□□ 0.32
USP39-206ENST00000448971 ATP2A1O14983 1001 aa17.03■□□□□ 0.32
USP39-206ENST00000448971 PLA2G6O60733 806 aa17.03■□□□□ 0.32
USP39-206ENST00000448971 GPATCH4Q5T3I0 446 aaKnown RBP17.03■□□□□ 0.32
USP39-206ENST00000448971 ZNF697Q5TEC3 545 aa17.03■□□□□ 0.32
USP39-206ENST00000448971 SYDE2Q5VT97 1194 aa17.03■□□□□ 0.32
USP39-206ENST00000448971 TTBK2Q6IQ55 1244 aa17.03■□□□□ 0.32
USP39-206ENST00000448971 CHST3Q7LGC8 479 aa17.03■□□□□ 0.32
USP39-206ENST00000448971 PDLIM7Q9NR12 457 aa17.03■□□□□ 0.32
USP39-206ENST00000448971 HOMER2Q9NSB8 354 aa17.03■□□□□ 0.32
USP39-206ENST00000448971 SLC5A4Q9NY91 659 aa17.03■□□□□ 0.32
USP39-206ENST00000448971 GOLGA8HP0CJ92 632 aa17.02■□□□□ 0.32
USP39-206ENST00000448971 SNHG28P0DPA3 235 aa17.02■□□□□ 0.32
USP39-206ENST00000448971 SNAP25P60880 206 aa17.02■□□□□ 0.32
USP39-206ENST00000448971 WTAPQ15007 396 aa17.02■□□□□ 0.32
USP39-206ENST00000448971 MB21D2Q8IYB1 491 aaPredicted RBP17.02■□□□□ 0.32
USP39-206ENST00000448971 FERMT2Q96AC1 680 aa17.02■□□□□ 0.32
USP39-206ENST00000448971 DHX16O60231 1041 aaKnown RBP17.01■□□□□ 0.31
USP39-206ENST00000448971 ITGB8P26012 769 aa17.01■□□□□ 0.31
USP39-206ENST00000448971 NECTIN1Q15223 517 aa17.01■□□□□ 0.31
USP39-206ENST00000448971 SEC23AQ15436 765 aa17.01■□□□□ 0.31
USP39-206ENST00000448971 ASPRV1Q53RT3 343 aa17.01■□□□□ 0.31
USP39-206ENST00000448971 TMEM67Q5HYA8 995 aa17.01■□□□□ 0.31
USP39-206ENST00000448971 ANKS1AQ92625 1134 aa17.01■□□□□ 0.31
USP39-206ENST00000448971 TTYH1Q9H313 450 aaPredicted RBP17.01■□□□□ 0.31
USP39-206ENST00000448971 PRDM5Q9NQX1 630 aaPredicted RBP17.01■□□□□ 0.31
USP39-206ENST00000448971 FBXO40Q9UH90 709 aa17.01■□□□□ 0.31
USP39-206ENST00000448971 CCPG1Q9ULG6 757 aa17.01■□□□□ 0.31
USP39-206ENST00000448971 RIPK3Q9Y572 518 aa17.01■□□□□ 0.31
USP39-206ENST00000448971 REC8O95072 547 aa17■□□□□ 0.31
USP39-206ENST00000448971 PGK2P07205 417 aa17■□□□□ 0.31
USP39-206ENST00000448971 PARP1P09874 1014 aaKnown RBP17■□□□□ 0.31
USP39-206ENST00000448971 ALAS1P13196 640 aa17■□□□□ 0.31
USP39-206ENST00000448971 ANTXR2P58335 489 aa17■□□□□ 0.31
USP39-206ENST00000448971 SMAD3P84022 425 aaKnown RBP17■□□□□ 0.31
USP39-206ENST00000448971 TLE2Q04725 743 aa17■□□□□ 0.31
USP39-206ENST00000448971 BTNL9Q6UXG8 535 aa17■□□□□ 0.31
USP39-206ENST00000448971 CHST13Q8NET6 341 aa17■□□□□ 0.31
USP39-206ENST00000448971 AGBL1Q96MI9 1066 aa17■□□□□ 0.31
USP39-206ENST00000448971 RANBP17Q9H2T7 1088 aaKnown RBP17■□□□□ 0.31
USP39-206ENST00000448971 ACAD9Q9H845 621 aa17■□□□□ 0.31
USP39-206ENST00000448971 RNF146Q9NTX7 359 aa17■□□□□ 0.31
USP39-206ENST00000448971 NRBP1Q9UHY1 535 aa17■□□□□ 0.31
USP39-206ENST00000448971 PHF24Q9UPV7 400 aa17■□□□□ 0.31
USP39-206ENST00000448971 ZNF536O15090 1300 aa16.99■□□□□ 0.31
USP39-206ENST00000448971 PRC1O43663 620 aa16.99■□□□□ 0.31
USP39-206ENST00000448971 MCM5P33992 734 aa16.99■□□□□ 0.31
USP39-206ENST00000448971 ZNF792Q3KQV3 632 aa16.99■□□□□ 0.31
USP39-206ENST00000448971 ANKRD35Q8N283 1001 aa16.99■□□□□ 0.31
USP39-206ENST00000448971 DDX11Q96FC9 970 aa16.99■□□□□ 0.31
USP39-206ENST00000448971 MUC3AQ02505 3323 aa16.98■□□□□ 0.31
USP39-206ENST00000448971 MYO9BQ13459 2157 aa16.98■□□□□ 0.31
USP39-206ENST00000448971 ICAM1P05362 532 aa16.98■□□□□ 0.31
USP39-206ENST00000448971 TAL1P17542 331 aaPredicted RBP16.98■□□□□ 0.31
USP39-206ENST00000448971 EPHB4P54760 987 aa16.98■□□□□ 0.31
USP39-206ENST00000448971 TKFCQ3LXA3 575 aa16.98■□□□□ 0.31
USP39-206ENST00000448971 NFXL1Q6ZNB6 911 aa16.98■□□□□ 0.31
USP39-206ENST00000448971 TINF2Q9BSI4 451 aa16.98■□□□□ 0.31
USP39-206ENST00000448971 UBA5Q9GZZ9 404 aa16.98■□□□□ 0.31
USP39-206ENST00000448971 CPVLQ9H3G5 476 aa16.98■□□□□ 0.31
USP39-206ENST00000448971 DIS3Q9Y2L1 958 aaKnown RBP16.98■□□□□ 0.31
USP39-206ENST00000448971 PGK1P00558 417 aa16.97■□□□□ 0.31
USP39-206ENST00000448971 ZNF865P0CJ78 1059 aaPredicted RBP16.97■□□□□ 0.31
USP39-206ENST00000448971 KRT32Q14532 448 aa16.97■□□□□ 0.31
USP39-206ENST00000448971 CDC37Q16543 378 aaPredicted RBP16.97■□□□□ 0.31
USP39-206ENST00000448971 CATIPQ7Z7H3 387 aa16.97■□□□□ 0.31
USP39-206ENST00000448971 MAFAQ8NHW3 353 aaPredicted RBP16.97■□□□□ 0.31
USP39-206ENST00000448971 TMEM87BQ96K49 555 aa16.97■□□□□ 0.31
USP39-206ENST00000448971 TRERF1Q96PN7 1200 aa16.97■□□□□ 0.31
USP39-206ENST00000448971 NEK1Q96PY6 1258 aa16.97■□□□□ 0.31
USP39-206ENST00000448971 SENP2Q9HC62 589 aa16.97■□□□□ 0.31
USP39-206ENST00000448971 XPNPEP3Q9NQH7 507 aa16.97■□□□□ 0.31
USP39-206ENST00000448971 CCDC69A6NI79 296 aa16.96■□□□□ 0.31
USP39-206ENST00000448971 SH2B2O14492 632 aaPredicted RBP16.96■□□□□ 0.31
USP39-206ENST00000448971 KIAA0355O15063 1070 aa16.96■□□□□ 0.31
USP39-206ENST00000448971 RARBP10826 455 aa16.96■□□□□ 0.31
USP39-206ENST00000448971 NUP133Q8WUM0 1156 aa16.96■□□□□ 0.31
USP39-206ENST00000448971 MYLIPQ8WY64 445 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms