RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 DHX58Q96C10 678 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 VCPKMTQ9H867 229 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 USP17L15C9J2P7 530 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 USP17L13C9JLJ4 530 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 USP17L11C9JVI0 530 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 USP17L18D6R9N7 530 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 USP17L22D6RA61 530 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 USP17L17D6RBQ6 530 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 USP17L19D6RCP7 530 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 USP17L20D6RJB6 530 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 ACTN4O43707 911 aaKnown RBP23.99■■□□□ 1.43
PTPRF-207ENST00000436724 EDIL3O43854 480 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 OFD1O75665 1012 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 DDNO94850 711 aaPredicted RBP23.99■■□□□ 1.43
PTPRF-207ENST00000436724 CLK2P49760 499 aaKnown RBP23.99■■□□□ 1.43
PTPRF-207ENST00000436724 STAT2P52630 851 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 USP17L24Q0WX57 530 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 USP17L6PQ6QN14 398 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 ANO10Q9NW15 660 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 ZKSCAN5Q9Y2L8 839 aa23.99■■□□□ 1.43
PTPRF-207ENST00000436724 ZNF500O60304 480 aaPredicted RBP23.98■■□□□ 1.43
PTPRF-207ENST00000436724 MDM2Q00987 491 aaPredicted RBP23.98■■□□□ 1.43
PTPRF-207ENST00000436724 ZNF341Q9BYN7 854 aa23.98■■□□□ 1.43
PTPRF-207ENST00000436724 CCDC39Q9UFE4 941 aa23.98■■□□□ 1.43
PTPRF-207ENST00000436724 INPP5BP32019 993 aa23.98■■□□□ 1.43
PTPRF-207ENST00000436724 MRPL12P52815 198 aaKnown RBP23.98■■□□□ 1.43
PTPRF-207ENST00000436724 AMNQ9BXJ7 453 aa23.98■■□□□ 1.43
PTPRF-207ENST00000436724 GGA3Q9NZ52 723 aa23.98■■□□□ 1.43
PTPRF-207ENST00000436724 RNF181Q9P0P0 153 aa23.98■■□□□ 1.43
PTPRF-207ENST00000436724 PRR29P0C7W0 189 aa23.97■■□□□ 1.43
PTPRF-207ENST00000436724 SAMD1Q6SPF0 538 aaPredicted RBP23.97■■□□□ 1.43
PTPRF-207ENST00000436724 TUBE1Q9UJT0 475 aa23.97■■□□□ 1.43
PTPRF-207ENST00000436724 PCDHA5Q9Y5H7 936 aa23.97■■□□□ 1.43
PTPRF-207ENST00000436724 SMCHD1A6NHR9 2005 aa23.97■■□□□ 1.43
PTPRF-207ENST00000436724 DGKZQ13574 1117 aa23.96■■□□□ 1.43
PTPRF-207ENST00000436724 IQCB1Q15051 598 aa23.96■■□□□ 1.43
PTPRF-207ENST00000436724 ZRSR1Q15695 479 aaKnown RBP23.96■■□□□ 1.43
PTPRF-207ENST00000436724 DTHD1Q6ZMT9 781 aa23.96■■□□□ 1.43
PTPRF-207ENST00000436724 FBXO11Q86XK2 927 aa23.96■■□□□ 1.43
PTPRF-207ENST00000436724 PP2D1A8MPX8 630 aa23.96■■□□□ 1.43
PTPRF-207ENST00000436724 NEMFO60524 1076 aa23.96■■□□□ 1.43
PTPRF-207ENST00000436724 TDP2O95551 362 aa23.96■■□□□ 1.43
PTPRF-207ENST00000436724 POTEDQ86YR6 584 aa23.96■■□□□ 1.43
PTPRF-207ENST00000436724 FEZ1Q99689 392 aa23.96■■□□□ 1.43
PTPRF-207ENST00000436724 POSTNQ15063 836 aa23.95■■□□□ 1.42
PTPRF-207ENST00000436724 KIFC2Q96AC6 838 aa23.95■■□□□ 1.42
PTPRF-207ENST00000436724 SH2D4AQ9H788 454 aa23.95■■□□□ 1.42
PTPRF-207ENST00000436724 FBXO28Q9NVF7 368 aa23.95■■□□□ 1.42
PTPRF-207ENST00000436724 ADCY5O95622 1261 aa23.95■■□□□ 1.42
PTPRF-207ENST00000436724 LONP1P36776 959 aaKnown RBP23.95■■□□□ 1.42
PTPRF-207ENST00000436724 SLC37A4O43826 429 aa23.94■■□□□ 1.42
PTPRF-207ENST00000436724 CTNND1O60716 968 aaKnown RBP23.94■■□□□ 1.42
PTPRF-207ENST00000436724 CAVIN2O95810 425 aa23.94■■□□□ 1.42
PTPRF-207ENST00000436724 OR52Z1P0C646 297 aa23.94■■□□□ 1.42
PTPRF-207ENST00000436724 CEP57L1Q8IYX8 460 aa23.94■■□□□ 1.42
PTPRF-207ENST00000436724 MEIS2O14770 477 aa23.93■■□□□ 1.42
PTPRF-207ENST00000436724 NLRP12P59046 1061 aa23.93■■□□□ 1.42
PTPRF-207ENST00000436724 APOBEC3FQ8IUX4 373 aaKnown RBP23.93■■□□□ 1.42
PTPRF-207ENST00000436724 LAD1O00515 517 aa23.93■■□□□ 1.42
PTPRF-207ENST00000436724 CASP1P29466 404 aa23.93■■□□□ 1.42
PTPRF-207ENST00000436724 AFMP43652 599 aa23.93■■□□□ 1.42
PTPRF-207ENST00000436724 DHX40Q8IX18 779 aaKnown RBP23.93■■□□□ 1.42
PTPRF-207ENST00000436724 ELOA2Q8IYF1 753 aaPredicted RBP23.93■■□□□ 1.42
PTPRF-207ENST00000436724 ZKSCAN4Q969J2 545 aaPredicted RBP23.93■■□□□ 1.42
PTPRF-207ENST00000436724 P2RX7Q99572 595 aaKnown RBP23.93■■□□□ 1.42
PTPRF-207ENST00000436724 MYH7BA7E2Y1 1941 aa23.93■■□□□ 1.42
PTPRF-207ENST00000436724 SLFN14P0C7P3 912 aa23.92■■□□□ 1.42
PTPRF-207ENST00000436724 STAMQ92783 540 aa23.92■■□□□ 1.42
PTPRF-207ENST00000436724 POLR2AP24928 1970 aaKnown RBP23.92■■□□□ 1.42
PTPRF-207ENST00000436724 OPLAHO14841 1288 aa23.92■■□□□ 1.42
PTPRF-207ENST00000436724 PRPHP41219 470 aa23.92■■□□□ 1.42
PTPRF-207ENST00000436724 KARSQ15046 597 aaKnown RBP23.92■■□□□ 1.42
PTPRF-207ENST00000436724 E2F4Q16254 413 aa23.92■■□□□ 1.42
PTPRF-207ENST00000436724 CCDC174Q6PII3 467 aa23.92■■□□□ 1.42
PTPRF-207ENST00000436724 DLK2Q6UY11 383 aa23.92■■□□□ 1.42
PTPRF-207ENST00000436724 HOOK1Q9UJC3 728 aaKnown RBP23.92■■□□□ 1.42
PTPRF-207ENST00000436724 AOPEPQ8N6M6 819 aa23.91■■□□□ 1.42
PTPRF-207ENST00000436724 BMP6P22004 513 aa23.91■■□□□ 1.42
PTPRF-207ENST00000436724 CHURC1Q8WUH1 139 aa23.91■■□□□ 1.42
PTPRF-207ENST00000436724 PAGE5Q96GU1 130 aa23.91■■□□□ 1.42
PTPRF-207ENST00000436724 WRNIP1Q96S55 665 aa23.91■■□□□ 1.42
PTPRF-207ENST00000436724 TECP42680 631 aa23.9■■□□□ 1.42
PTPRF-207ENST00000436724 TXKP42681 527 aa23.9■■□□□ 1.42
PTPRF-207ENST00000436724 C9orf131Q5VYM1 1079 aa23.9■■□□□ 1.42
PTPRF-207ENST00000436724 DCAF15Q66K64 600 aa23.9■■□□□ 1.42
PTPRF-207ENST00000436724 KANK3Q6NY19 840 aa23.9■■□□□ 1.42
PTPRF-207ENST00000436724 BECN2A8MW95 431 aa23.89■■□□□ 1.42
PTPRF-207ENST00000436724 HOXA13P31271 388 aaPredicted RBP23.89■■□□□ 1.42
PTPRF-207ENST00000436724 CALCRLQ16602 461 aa23.89■■□□□ 1.42
PTPRF-207ENST00000436724 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.89■■□□□ 1.42
PTPRF-207ENST00000436724 ILDR2Q71H61 639 aa23.89■■□□□ 1.42
PTPRF-207ENST00000436724 SH3RF1Q7Z6J0 888 aa23.89■■□□□ 1.42
PTPRF-207ENST00000436724 IQUBQ8NA54 791 aa23.89■■□□□ 1.42
PTPRF-207ENST00000436724 MTMR9Q96QG7 549 aa23.89■■□□□ 1.42
PTPRF-207ENST00000436724 PLIN2Q99541 437 aa23.89■■□□□ 1.42
PTPRF-207ENST00000436724 ANO3Q9BYT9 981 aa23.89■■□□□ 1.42
PTPRF-207ENST00000436724 NAT10Q9H0A0 1025 aaKnown RBP23.89■■□□□ 1.42
PTPRF-207ENST00000436724 GLT8D2Q9H1C3 349 aa23.89■■□□□ 1.42
PTPRF-207ENST00000436724 MTMR2Q13614 643 aa23.89■■□□□ 1.41
PTPRF-207ENST00000436724 RANBP17Q9H2T7 1088 aaKnown RBP23.89■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms