RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 CLEC4DQ8WXI8 215 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 PIGSQ96S52 555 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 VAT1LQ9HCJ6 419 aa14.44□□□□□ -0.1
USP40-205ENST00000430158 CNTNAP5Q8WYK1 1306 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 GOLGA8AA7E2F4 631 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 GOLGA8BA8MQT2 603 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 TNPO2O14787 897 aaKnown RBP14.43□□□□□ -0.1
USP40-205ENST00000430158 OPLAHO14841 1288 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 ZBTB5O15062 677 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 ECM2O94769 699 aaPredicted RBP14.43□□□□□ -0.1
USP40-205ENST00000430158 LARGE1O95461 756 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 FMNL1O95466 1100 aaPredicted RBP14.43□□□□□ -0.1
USP40-205ENST00000430158 COPB2P35606 906 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 FGD1P98174 961 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 PRKCZQ05513 592 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 ST3GAL1Q11201 340 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 KIF22Q14807 665 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 RABEP1Q15276 862 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 TKFCQ3LXA3 575 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 MUM1L1Q5H9M0 696 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 SYNE3Q6ZMZ3 975 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 ABRAQ8N0Z2 381 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 UPF2Q9HAU5 1272 aaKnown RBP14.43□□□□□ -0.1
USP40-205ENST00000430158 RBM28Q9NW13 759 aaKnown RBP14.43□□□□□ -0.1
USP40-205ENST00000430158 PCDH10Q9P2E7 1040 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 PTPN22Q9Y2R2 807 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 TRIM17Q9Y577 477 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 PLXNA1Q9UIW2 1896 aa14.43□□□□□ -0.1
USP40-205ENST00000430158 DNAJC25-GNG10A0A024R161 153 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 PNMA6FA0A0J9YX94 578 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 SLC15A5A6NIM6 579 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 STRNO43815 780 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 PFKFB2O60825 505 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 COBLO75128 1261 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 HOXC6P09630 235 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 FLT3LGP49771 235 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 METAP2P50579 478 aaKnown RBP eCLIP14.42□□□□□ -0.1
USP40-205ENST00000430158 IRF5Q13568 498 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 ME3Q16798 604 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 COL13A1Q5TAT6 717 aaPredicted RBP14.42□□□□□ -0.1
USP40-205ENST00000430158 NCAPG2Q86XI2 1143 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 CHST13Q8NET6 341 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 NCOA5Q9HCD5 579 aaKnown RBP14.42□□□□□ -0.1
USP40-205ENST00000430158 CCPG1Q9ULG6 757 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 MCM3APO60318 1980 aa14.42□□□□□ -0.1
USP40-205ENST00000430158 CD2BP2O95400 341 aaKnown RBP14.41□□□□□ -0.1
USP40-205ENST00000430158 PRMT2P55345 433 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 GHRHRQ02643 423 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 SCRN1Q12765 414 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 ANKRD1Q15327 319 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 COA7Q96BR5 231 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 FGD4Q96M96 766 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 TRERF1Q96PN7 1200 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 RNF146Q9NTX7 359 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 PNMA2Q9UL42 364 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 TRPC6Q9Y210 931 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 CENPFP49454 3210 aa14.41□□□□□ -0.1
USP40-205ENST00000430158 NFIBO00712 420 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 CTDNEP1O95476 244 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 XRCC5P13010 732 aaKnown RBP14.4□□□□□ -0.1
USP40-205ENST00000430158 ALAS1P13196 640 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 IFNAR1P17181 557 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 HOXD10P28358 340 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 ADORA2AP29274 412 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 CCT2P78371 535 aaKnown RBP14.4□□□□□ -0.1
USP40-205ENST00000430158 MAP2K5Q13163 448 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 ARHGEF6Q15052 776 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 PKN1Q16512 942 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 FBXO11Q86XK2 927 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 RGS22Q8NE09 1264 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 IL27Q8NEV9 243 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 AMNQ9BXJ7 453 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 ACAD9Q9H845 621 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 A1CFQ9NQ94 594 aaKnown RBP14.4□□□□□ -0.1
USP40-205ENST00000430158 FBXO40Q9UH90 709 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 CTDP1Q9Y5B0 961 aaPredicted RBP14.4□□□□□ -0.1
USP40-205ENST00000430158 PTCH2Q9Y6C5 1203 aa14.4□□□□□ -0.1
USP40-205ENST00000430158 CCDC196A0A1B0GTZ2 297 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 hCG_1642624A0A1W2PR95 340 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 FCER1AP12319 257 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 PKN2Q16513 984 aaKnown RBP14.39□□□□□ -0.11
USP40-205ENST00000430158 ZNF792Q3KQV3 632 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 FBXO46Q6PJ61 603 aaPredicted RBP14.39□□□□□ -0.11
USP40-205ENST00000430158 CCDC82Q8N4S0 544 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 NPLOC4Q8TAT6 608 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 SOCS4Q8WXH5 440 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 TBC1D5Q92609 795 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 SHISA4Q96DD7 197 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 RRP36Q96EU6 259 aaKnown RBP14.39□□□□□ -0.11
USP40-205ENST00000430158 MMP19Q99542 508 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 NUDT12Q9BQG2 462 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 MAF1Q9H063 256 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 HOMER2Q9NSB8 354 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 BMP2KQ9NSY1 1161 aaPredicted RBP14.39□□□□□ -0.11
USP40-205ENST00000430158 LIMCH1Q9UPQ0 1083 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 V9GY48 417 aaPredicted RBP14.39□□□□□ -0.11
USP40-205ENST00000430158 ASTN1O14525 1302 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 ABCB11O95342 1321 aa14.39□□□□□ -0.11
USP40-205ENST00000430158 RBBP6Q7Z6E9 1792 aaKnown RBP14.38□□□□□ -0.11
USP40-205ENST00000430158 PRPF3O43395 683 aaKnown RBP14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms