RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 CYP4F3Q08477 520 aa8.67□□□□□ -1.02
CCDC88A-206ENST00000430086 SCRN1Q12765 414 aa8.67□□□□□ -1.02
CCDC88A-206ENST00000430086 HSP90AA2PQ14568 343 aaPredicted RBP8.67□□□□□ -1.02
CCDC88A-206ENST00000430086 SLC14A2Q15849 920 aa8.67□□□□□ -1.02
CCDC88A-206ENST00000430086 TIGD5Q53EQ6 642 aa8.67□□□□□ -1.02
CCDC88A-206ENST00000430086 SPATC1Q76KD6 591 aa8.67□□□□□ -1.02
CCDC88A-206ENST00000430086 KSR1Q8IVT5 923 aa8.67□□□□□ -1.02
CCDC88A-206ENST00000430086 SRPK1Q96SB4 655 aaKnown RBP8.67□□□□□ -1.02
CCDC88A-206ENST00000430086 CARMIL2Q6F5E8 1435 aa8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 TRBV23OR9-2A0A075B6M9 112 aa8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 GLI1P08151 1106 aa8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 NFE2L2Q16236 605 aa8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 KCNMB1Q16558 191 aa8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 HSF5Q4G112 596 aaPredicted RBP8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 GALNT18Q6P9A2 607 aa8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 FAM168AQ92567 244 aa8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 SHISA4Q96DD7 197 aa8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 ASIC4Q96FT7 647 aa8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 SPATA9Q9BWV2 254 aa8.66□□□□□ -1.02
CCDC88A-206ENST00000430086 PSPNO60542 156 aa8.65□□□□□ -1.02
CCDC88A-206ENST00000430086 CPP00450 1065 aa8.65□□□□□ -1.02
CCDC88A-206ENST00000430086 PAMP19021 973 aa8.65□□□□□ -1.02
CCDC88A-206ENST00000430086 GFRA1P56159 465 aa8.65□□□□□ -1.02
CCDC88A-206ENST00000430086 IFRD2Q12894 506 aaPredicted RBP8.65□□□□□ -1.02
CCDC88A-206ENST00000430086 TMEM67Q5HYA8 995 aa8.65□□□□□ -1.02
CCDC88A-206ENST00000430086 NLRX1Q86UT6 975 aa8.65□□□□□ -1.02
CCDC88A-206ENST00000430086 JMJD8Q96S16 334 aa8.65□□□□□ -1.02
CCDC88A-206ENST00000430086 CWC22Q9HCG8 908 aaKnown RBP8.65□□□□□ -1.02
CCDC88A-206ENST00000430086 ARHGEF4Q9NR80 690 aa8.65□□□□□ -1.02
CCDC88A-206ENST00000430086 THBDP07204 575 aa8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 SNRPB2P08579 225 aaKnown RBP8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 GRIA2P42262 883 aa8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 SSRP1Q08945 709 aaKnown RBP8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 NPLOC4Q8TAT6 608 aa8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 FRS2Q8WU20 508 aa8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 AARSD1Q9BTE6 412 aaKnown RBP8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 RNF32Q9H0A6 362 aa8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 CRTAC1Q9NQ79 661 aa8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 GPRC5CQ9NQ84 441 aa8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 GPR160Q9UJ42 338 aa8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 ACSL6Q9UKU0 697 aa8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 CDK11AQ9UQ88 783 aaPredicted RBP8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 TAF6LQ9Y6J9 622 aa8.64□□□□□ -1.03
CCDC88A-206ENST00000430086 NPHP3-ACAD11A0A0J9YXS1 232 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 EFEMP2O95967 443 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 FGFR1P11362 822 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 PLS3P13797 630 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 MAP4K2Q12851 820 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 TESK1Q15569 626 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 SF1Q15637 639 aaKnown RBP8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 CCDC144BQ3MJ40 725 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 JAMLQ86YT9 394 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 KREMEN2Q8NCW0 462 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 NLGN2Q8NFZ4 835 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 MMP19Q99542 508 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 PLCD4Q9BRC7 762 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 PFDN2Q9UHV9 154 aa8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 YBX2Q9Y2T7 364 aaKnown RBP8.63□□□□□ -1.03
CCDC88A-206ENST00000430086 TRAV20A0A0B4J274 112 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 ADCY3O60266 1144 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 DIAPH1O60610 1272 aaKnown RBP8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 L1CAMP32004 1257 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 CORO7P57737 925 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 RBM10P98175 930 aaKnown RBP8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 LONRF2Q1L5Z9 754 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 SLC35F1Q5T1Q4 408 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 ACBD5Q5T8D3 534 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 E4F1Q66K89 784 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 IQCEQ6IPM2 695 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 DPH6Q7L8W6 267 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 TMEM145Q8NBT3 493 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 C1orf159Q96HA4 380 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 DNAJC7Q99615 494 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 ZSWIM4Q9H7M6 989 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 CLEC1BQ9P126 229 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 USP35Q9P2H5 1018 aa8.62□□□□□ -1.03
CCDC88A-206ENST00000430086 KDM2BQ8NHM5 1336 aa8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 ZNF503-AS2A6NEH8 195 aa8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 PNLIPP16233 465 aa8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 ECI1P42126 302 aa8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 KCNJ6P48051 423 aa8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 BMS1Q14692 1282 aaKnown RBP8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 JMYQ8N9B5 988 aa8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 ZBTB38Q8NAP3 1195 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 KCTD13Q8WZ19 329 aa8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 IER2Q9BTL4 223 aa8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 IMPACTQ9P2X3 320 aa8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-206ENST00000430086 DLX3O60479 287 aa8.6□□□□□ -1.03
CCDC88A-206ENST00000430086 LAPTM5Q13571 262 aa8.6□□□□□ -1.03
CCDC88A-206ENST00000430086 CPNE8Q86YQ8 564 aa8.6□□□□□ -1.03
CCDC88A-206ENST00000430086 MRFAP1L1Q96HT8 127 aa8.6□□□□□ -1.03
CCDC88A-206ENST00000430086 SLC6A17Q9H1V8 727 aa8.6□□□□□ -1.03
CCDC88A-206ENST00000430086 FAM53CQ9NYF3 392 aa8.6□□□□□ -1.03
CCDC88A-206ENST00000430086 PABPC1P11940 636 aaKnown RBP8.59□□□□□ -1.03
CCDC88A-206ENST00000430086 PRKCAP17252 672 aa8.59□□□□□ -1.03
CCDC88A-206ENST00000430086 MVKQ03426 396 aa8.59□□□□□ -1.03
CCDC88A-206ENST00000430086 PRSS53Q2L4Q9 553 aa8.59□□□□□ -1.03
CCDC88A-206ENST00000430086 DENND5AQ6IQ26 1287 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms