RNA–Protein interactions for RNA: ENST00000428404.5

TRIM39-207, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 427 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-207ENST00000428404 ABCB11O95342 1321 aa14.36□□□□□ -0.11
TRIM39-207ENST00000428404 RASSF10A6NK89 507 aa14.35□□□□□ -0.11
TRIM39-207ENST00000428404 PDHXO00330 501 aa14.35□□□□□ -0.11
TRIM39-207ENST00000428404 TAL1P17542 331 aaPredicted RBP14.35□□□□□ -0.11
TRIM39-207ENST00000428404 MRPL12P52815 198 aaKnown RBP14.35□□□□□ -0.11
TRIM39-207ENST00000428404 INHBEP58166 350 aa14.35□□□□□ -0.11
TRIM39-207ENST00000428404 USH1GQ495M9 461 aa14.35□□□□□ -0.11
TRIM39-207ENST00000428404 FAM43AQ8N2R8 423 aa14.35□□□□□ -0.11
TRIM39-207ENST00000428404 BICD2Q8TD16 824 aa14.35□□□□□ -0.11
TRIM39-207ENST00000428404 CLEC4DQ8WXI8 215 aa14.35□□□□□ -0.11
TRIM39-207ENST00000428404 PSTPIP2Q9H939 334 aa14.35□□□□□ -0.11
TRIM39-207ENST00000428404 BRMS1Q9HCU9 246 aa14.35□□□□□ -0.11
TRIM39-207ENST00000428404 ZCCHC17Q9NP64 241 aaKnown RBP14.35□□□□□ -0.11
TRIM39-207ENST00000428404 CCPG1Q9ULG6 757 aa14.35□□□□□ -0.11
TRIM39-207ENST00000428404 MRPL11Q9Y3B7 192 aaKnown RBP14.35□□□□□ -0.11
TRIM39-207ENST00000428404 PIK3CDO00329 1044 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 MEIS2O14770 477 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 CNMDO75829 334 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 CLK2P49760 499 aaKnown RBP14.34□□□□□ -0.11
TRIM39-207ENST00000428404 ADCY7P51828 1080 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 GHRHRQ02643 423 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 CPXCR1Q8N123 301 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 CUL5Q93034 780 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 TEX13BQ9BXU2 312 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 BTBD7Q9P203 1132 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 RBPJLQ9UBG7 517 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 PNMA3Q9UL41 463 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 PCDHA6Q9UN73 950 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 RABGAP1Q9Y3P9 1069 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 PCDHA8Q9Y5H6 950 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 ATP6V1DQ9Y5K8 247 aa14.34□□□□□ -0.11
TRIM39-207ENST00000428404 SMCHD1A6NHR9 2005 aa14.33□□□□□ -0.12
TRIM39-207ENST00000428404 STAT3P40763 770 aa14.33□□□□□ -0.12
TRIM39-207ENST00000428404 TM4SF4P48230 202 aa14.33□□□□□ -0.12
TRIM39-207ENST00000428404 TKFCQ3LXA3 575 aa14.33□□□□□ -0.12
TRIM39-207ENST00000428404 NOM1Q5C9Z4 860 aaKnown RBP14.33□□□□□ -0.12
TRIM39-207ENST00000428404 EARS2Q5JPH6 523 aaKnown RBP14.33□□□□□ -0.12
TRIM39-207ENST00000428404 FAM173BQ6P4H8 233 aa14.33□□□□□ -0.12
TRIM39-207ENST00000428404 REXO1Q8N1G1 1221 aaKnown RBP14.33□□□□□ -0.12
TRIM39-207ENST00000428404 SAMD3Q8N6K7 520 aa14.33□□□□□ -0.12
TRIM39-207ENST00000428404 GTF3C2Q8WUA4 911 aaPredicted RBP14.33□□□□□ -0.12
TRIM39-207ENST00000428404 MAF1Q9H063 256 aa14.33□□□□□ -0.12
TRIM39-207ENST00000428404 RIPK3Q9Y572 518 aa14.33□□□□□ -0.12
TRIM39-207ENST00000428404 CTDP1Q9Y5B0 961 aaPredicted RBP14.33□□□□□ -0.12
TRIM39-207ENST00000428404 IGF2BP3O00425 579 aaKnown RBP eCLIP14.32□□□□□ -0.12
TRIM39-207ENST00000428404 BAG4O95429 457 aaKnown RBP14.32□□□□□ -0.12
TRIM39-207ENST00000428404 CYP2C8P10632 490 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 TOB1P50616 345 aaPredicted RBP14.32□□□□□ -0.12
TRIM39-207ENST00000428404 GNL2Q13823 731 aaKnown RBP14.32□□□□□ -0.12
TRIM39-207ENST00000428404 DEFB115Q30KQ5 88 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 MUM1L1Q5H9M0 696 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 MYSM1Q5VVJ2 828 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 ATL3Q6DD88 541 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 CYP4F22Q6NT55 531 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 KRT25Q7Z3Z0 450 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 RIOX2Q8IUF8 465 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 RASGRP4Q8TDF6 673 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 TBC1D5Q92609 795 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 CHAMP1Q96JM3 812 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 TRERF1Q96PN7 1200 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 ZIC5Q96T25 663 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 SPATC1LQ9H0A9 340 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 TXNRD2Q9NNW7 524 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 BIN2Q9UBW5 565 aaPredicted RBP14.32□□□□□ -0.12
TRIM39-207ENST00000428404 A0A0G2JMZ2 1700 aa14.32□□□□□ -0.12
TRIM39-207ENST00000428404 FAM205CA6NFA0 338 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 NFIBO00712 420 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 PEX10O60683 326 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 ALAS1P13196 640 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 GCLCP48506 637 aaPredicted RBP14.31□□□□□ -0.12
TRIM39-207ENST00000428404 HSD17B4P51659 736 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 DNM1Q05193 864 aaKnown RBP14.31□□□□□ -0.12
TRIM39-207ENST00000428404 SREBF2Q12772 1141 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 UBE2SQ16763 222 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 MCTP2Q6DN12 878 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 SNRNP48Q6IEG0 339 aaKnown RBP14.31□□□□□ -0.12
TRIM39-207ENST00000428404 USP17L6PQ6QN14 398 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.31□□□□□ -0.12
TRIM39-207ENST00000428404 MCF2L2Q86YR7 1114 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 IFNL1Q8IU54 200 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 TMEM260Q9NX78 707 aa14.31□□□□□ -0.12
TRIM39-207ENST00000428404 MAP3K20Q9NYL2 800 aaKnown RBP14.31□□□□□ -0.12
TRIM39-207ENST00000428404 GCOM1H8Y6P7 765 aaPredicted RBP14.3□□□□□ -0.12
TRIM39-207ENST00000428404 EDIL3O43854 480 aa14.3□□□□□ -0.12
TRIM39-207ENST00000428404 FOSP01100 380 aaPredicted RBP14.3□□□□□ -0.12
TRIM39-207ENST00000428404 POLR2MP0CAP2 368 aa14.3□□□□□ -0.12
TRIM39-207ENST00000428404 TRAPPC10P48553 1259 aa14.3□□□□□ -0.12
TRIM39-207ENST00000428404 NOGQ13253 232 aa14.3□□□□□ -0.12
TRIM39-207ENST00000428404 Q3C1V9 767 aa14.3□□□□□ -0.12
TRIM39-207ENST00000428404 FOXD4L6Q3SYB3 417 aaPredicted RBP14.3□□□□□ -0.12
TRIM39-207ENST00000428404 RILPL1Q5EBL4 403 aa14.3□□□□□ -0.12
TRIM39-207ENST00000428404 JAKMIP3Q5VZ66 844 aa14.3□□□□□ -0.12
TRIM39-207ENST00000428404 FOXD4L3Q6VB84 417 aaPredicted RBP14.3□□□□□ -0.12
TRIM39-207ENST00000428404 PIK3AP1Q6ZUJ8 805 aa14.3□□□□□ -0.12
TRIM39-207ENST00000428404 CHST13Q8NET6 341 aa14.3□□□□□ -0.12
TRIM39-207ENST00000428404 CAPNS2Q96L46 248 aa14.3□□□□□ -0.12
TRIM39-207ENST00000428404 ZNF396Q96N95 335 aaPredicted RBP14.3□□□□□ -0.12
TRIM39-207ENST00000428404 PARK7Q99497 189 aaKnown RBP14.3□□□□□ -0.12
TRIM39-207ENST00000428404 MOV10L1Q9BXT6 1211 aaKnown RBP14.3□□□□□ -0.12
TRIM39-207ENST00000428404 RNF146Q9NTX7 359 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms