RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 RNF220Q5VTB9 566 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 BTBD7Q9P203 1132 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 GFAPP14136 432 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 RRP36Q96EU6 259 aaKnown RBP3.74□□□□□ -1.81
SYNE1-212ENST00000423061 SMC6Q96SB8 1091 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 SH3GL1Q99961 368 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 CD2APQ9Y5K6 639 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 ADGRL1O94910 1474 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 GOLGA8BA8MQT2 603 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 NSRP1Q9H0G5 558 aaKnown RBP3.74□□□□□ -1.81
SYNE1-212ENST00000423061 CEP170Q5SW79 1584 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 FESP07332 822 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 ETS2P15036 469 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 KCNJ2P63252 427 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 MCL1Q07820 350 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 HACD3Q9P035 362 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 ATP2A2P16615 1042 aaKnown RBP3.74□□□□□ -1.81
SYNE1-212ENST00000423061 CXCR5P32302 372 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 PSMC1P62191 440 aaKnown RBP3.74□□□□□ -1.81
SYNE1-212ENST00000423061 DZIP3Q86Y13 1208 aaKnown RBP3.74□□□□□ -1.81
SYNE1-212ENST00000423061 ARFGAP2Q8N6H7 521 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 PGBD1Q96JS3 809 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 SLC7A5P2Q9GIP4 190 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 CWC25Q9NXE8 425 aaPredicted RBP3.74□□□□□ -1.81
SYNE1-212ENST00000423061 SSH2Q76I76 1423 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 ZNF185O15231 689 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 CHKAP35790 457 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 DDB1Q16531 1140 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 TRIM65Q6PJ69 517 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 BRF1Q92994 677 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 SLC7A5P1Q8MH63 180 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 WDR37Q9Y2I8 494 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 AK2P54819 239 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 RCN1Q15293 331 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 MIS12Q9H081 205 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 RAPGEF5Q92565 580 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 WWC3Q9ULE0 1092 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 PLAAQ9Y263 795 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 LDHCP07864 332 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 BLMHQ13867 455 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 TMTC4Q5T4D3 741 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 TLDC1Q6P9B6 456 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 MSH6P52701 1360 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 RBL2Q08999 1139 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 PPP4R3AQ6IN85 833 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 CYP26C1Q6V0L0 522 aa3.74□□□□□ -1.81
SYNE1-212ENST00000423061 PHAXQ9H814 394 aaKnown RBP3.74□□□□□ -1.81
SYNE1-212ENST00000423061 THRAP3Q9Y2W1 955 aaKnown RBP3.74□□□□□ -1.81
SYNE1-212ENST00000423061 HDAC4P56524 1084 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 C3orf67Q6ZVT6 689 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 NEK10Q6ZWH5 1172 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 PALB2Q86YC2 1186 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 COG1Q8WTW3 980 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 MPP4Q96JB8 637 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 A2MP01023 1474 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 PZPP20742 1482 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 SBNO1A3KN83 1393 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 PNOCQ13519 176 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 KIAA2013Q8IYS2 634 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 VWA3AA6NCI4 1184 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 DHX9Q08211 1270 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 SCUBE1Q8IWY4 988 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 OR8K1Q8NGG5 319 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 MYCBPAPQ8TBZ2 947 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 DDX50Q9BQ39 737 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 PAG1Q9NWQ8 432 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 TSPAN9O75954 239 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 FLT3P36888 993 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 POLR2FP61218 127 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 TAOK1Q7L7X3 1001 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ANKRD13CQ8N6S4 541 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ZBED2Q9BTP6 218 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 XAB2Q9HCS7 855 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 PCDHGA3Q9Y5H0 932 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 EAPPQ56P03 285 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 LLGL2Q6P1M3 1020 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CCDC25Q86WR0 208 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 AFAP1Q8N556 730 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 KRT75O95678 551 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 SMARCA1P28370 1054 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 MYBPC3Q14896 1274 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ST13P4Q8IZP2 240 aaPredicted RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 GDAP1Q8TB36 358 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 SPEF1Q9Y4P9 236 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 PLB1Q6P1J6 1458 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 B3GALNT1O75752 331 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 DIS3Q9Y2L1 958 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 SAR1BQ9Y6B6 198 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 SYF2O95926 243 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 USP11P51784 963 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 ATP8B2P98198 1209 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 TMEM53Q6P2H8 277 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 INTS8Q75QN2 995 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 NEK9Q8TD19 979 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 NAP1L4Q99733 375 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 NAA15Q9BXJ9 866 aaKnown RBP3.73□□□□□ -1.81
SYNE1-212ENST00000423061 DNM1LO00429 736 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 CCND1P24385 295 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 PMS2P54278 862 aa3.73□□□□□ -1.81
SYNE1-212ENST00000423061 NLRP6P59044 892 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms