RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 SLC4A3P48751 1232 aa19.64■□□□□ 0.73
COL7A1-202ENST00000422991 SSRP1Q08945 709 aaKnown RBP19.64■□□□□ 0.73
COL7A1-202ENST00000422991 TRAF1Q13077 416 aa19.64■□□□□ 0.73
COL7A1-202ENST00000422991 PKN1Q16512 942 aa19.64■□□□□ 0.73
COL7A1-202ENST00000422991 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.64■□□□□ 0.73
COL7A1-202ENST00000422991 CHST13Q8NET6 341 aa19.64■□□□□ 0.73
COL7A1-202ENST00000422991 ARHGAP39Q9C0H5 1083 aa19.64■□□□□ 0.73
COL7A1-202ENST00000422991 HOMER2Q9NSB8 354 aa19.64■□□□□ 0.73
COL7A1-202ENST00000422991 DOCK3Q8IZD9 2030 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 PTPDC1A2A3K4 754 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 K7ELQ4 463 aaPredicted RBP19.63■□□□□ 0.73
COL7A1-202ENST00000422991 SCG2P13521 617 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 CAP1Q01518 475 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 AKAP17AQ02040 695 aaKnown RBP19.63■□□□□ 0.73
COL7A1-202ENST00000422991 KIF22Q14807 665 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 PFKFB3Q16875 520 aaPredicted RBP19.63■□□□□ 0.73
COL7A1-202ENST00000422991 MUM1L1Q5H9M0 696 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 WWC2Q6AWC2 1192 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 GPR142Q7Z601 462 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 HSCBQ8IWL3 235 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 CCAR1Q8IX12 1150 aaKnown RBP19.63■□□□□ 0.73
COL7A1-202ENST00000422991 CD99L2Q8TCZ2 262 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 ERO1AQ96HE7 468 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 TRIM47Q96LD4 638 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 TRERF1Q96PN7 1200 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 LLPHQ9BRT6 129 aaKnown RBP19.63■□□□□ 0.73
COL7A1-202ENST00000422991 ACAD9Q9H845 621 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 FBXO40Q9UH90 709 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 PCDHA1Q9Y5I3 950 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 LCTP09848 1927 aa19.63■□□□□ 0.73
COL7A1-202ENST00000422991 ZNFX1Q9P2E3 1918 aaKnown RBP19.63■□□□□ 0.73
COL7A1-202ENST00000422991 hCG_1984214I3L0E3 225 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 JAK2O60674 1132 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 DTNBO60941 627 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 DEXIO95424 95 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 PSMC4P43686 418 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 FCGRTP55899 365 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 CUL4AQ13619 759 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 PKN2Q16513 984 aaKnown RBP19.62■□□□□ 0.73
COL7A1-202ENST00000422991 WDR78Q5VTH9 848 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 HEATR3Q7Z4Q2 680 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 PLEKHH3Q7Z736 793 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 ZNF713Q8N859 430 aaPredicted RBP19.62■□□□□ 0.73
COL7A1-202ENST00000422991 CLEC4DQ8WXI8 215 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 GPKOWQ92917 476 aaPredicted RBP eCLIP19.62■□□□□ 0.73
COL7A1-202ENST00000422991 COA7Q96BR5 231 aa19.62■□□□□ 0.73
COL7A1-202ENST00000422991 NFIBO00712 420 aa19.61■□□□□ 0.73
COL7A1-202ENST00000422991 TNPO2O14787 897 aaKnown RBP19.61■□□□□ 0.73
COL7A1-202ENST00000422991 ECM2O94769 699 aaPredicted RBP19.61■□□□□ 0.73
COL7A1-202ENST00000422991 PPP1R18Q6NYC8 613 aa19.61■□□□□ 0.73
COL7A1-202ENST00000422991 SMARCC2Q8TAQ2 1214 aa19.61■□□□□ 0.73
COL7A1-202ENST00000422991 CWC22Q9HCG8 908 aaKnown RBP19.61■□□□□ 0.73
COL7A1-202ENST00000422991 BARHL2Q9NY43 387 aa19.61■□□□□ 0.73
COL7A1-202ENST00000422991 ORC3Q9UBD5 711 aaPredicted RBP19.61■□□□□ 0.73
COL7A1-202ENST00000422991 MRPL11Q9Y3B7 192 aaKnown RBP19.61■□□□□ 0.73
COL7A1-202ENST00000422991 PLXNA1Q9UIW2 1896 aa19.6■□□□□ 0.73
COL7A1-202ENST00000422991 STXBP3O00186 592 aa19.6■□□□□ 0.73
COL7A1-202ENST00000422991 OPLAHO14841 1288 aa19.6■□□□□ 0.73
COL7A1-202ENST00000422991 FDPSP14324 419 aaKnown RBP19.6■□□□□ 0.73
COL7A1-202ENST00000422991 IVNS1ABPQ9Y6Y0 642 aa19.6■□□□□ 0.73
COL7A1-202ENST00000422991 CCDC85CA6NKD9 419 aa19.59■□□□□ 0.73
COL7A1-202ENST00000422991 STRNO43815 780 aa19.59■□□□□ 0.73
COL7A1-202ENST00000422991 FCER1AP12319 257 aa19.59■□□□□ 0.73
COL7A1-202ENST00000422991 PTPREP23469 700 aa19.59■□□□□ 0.73
COL7A1-202ENST00000422991 GRB14Q14449 540 aa19.59■□□□□ 0.73
COL7A1-202ENST00000422991 MORN1Q5T089 497 aa19.59■□□□□ 0.73
COL7A1-202ENST00000422991 TYW1BQ6NUM6 668 aa19.59■□□□□ 0.73
COL7A1-202ENST00000422991 ABRAQ8N0Z2 381 aa19.59■□□□□ 0.73
COL7A1-202ENST00000422991 DDX11Q96FC9 970 aa19.59■□□□□ 0.73
COL7A1-202ENST00000422991 MMP19Q99542 508 aa19.59■□□□□ 0.73
COL7A1-202ENST00000422991 A1CFQ9NQ94 594 aaKnown RBP19.59■□□□□ 0.73
COL7A1-202ENST00000422991 PFASO15067 1338 aa19.58■□□□□ 0.73
COL7A1-202ENST00000422991 SLC15A5A6NIM6 579 aa19.58■□□□□ 0.72
COL7A1-202ENST00000422991 NAPAP54920 295 aa19.58■□□□□ 0.72
COL7A1-202ENST00000422991 HMGN5P82970 282 aaKnown RBP19.58■□□□□ 0.72
COL7A1-202ENST00000422991 RGS22Q8NE09 1264 aa19.58■□□□□ 0.72
COL7A1-202ENST00000422991 SHISA4Q96DD7 197 aa19.58■□□□□ 0.72
COL7A1-202ENST00000422991 AIFM3Q96NN9 605 aa19.58■□□□□ 0.72
COL7A1-202ENST00000422991 GNRH1P01148 92 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 ADORA2AP29274 412 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 GHRHRQ02643 423 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 KCTD2Q14681 263 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 ARHGEF6Q15052 776 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 NSMFQ6X4W1 530 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 MCF2L2Q86YR7 1114 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 ANKRD35Q8N283 1001 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 SOCS4Q8WXH5 440 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 WASF1Q92558 559 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 USP6NLQ92738 828 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 MAF1Q9H063 256 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 SH3GLB2Q9NR46 395 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 CYP39A1Q9NYL5 469 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 GJD2Q9UKL4 321 aa19.57■□□□□ 0.72
COL7A1-202ENST00000422991 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.57■□□□□ 0.72
COL7A1-202ENST00000422991 DNAJC25-GNG10A0A024R161 153 aa19.56■□□□□ 0.72
COL7A1-202ENST00000422991 ESYT2A0FGR8 921 aa19.56■□□□□ 0.72
COL7A1-202ENST00000422991 SLC30A10Q6XR72 485 aa19.56■□□□□ 0.72
COL7A1-202ENST00000422991 FAM177A1Q8N128 213 aaPredicted RBP19.56■□□□□ 0.72
COL7A1-202ENST00000422991 CCDC12Q8WUD4 166 aaPredicted RBP19.56■□□□□ 0.72
COL7A1-202ENST00000422991 ALG1Q9BT22 464 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms