RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 CAPZA3Q96KX2 299 aa10.96□□□□□ -0.65
CD44-206ENST00000415148 LZTS2Q9BRK4 669 aa10.96□□□□□ -0.65
CD44-206ENST00000415148 ZNHIT6Q9NWK9 470 aaKnown RBP10.96□□□□□ -0.65
CD44-206ENST00000415148 PCDHA6Q9UN73 950 aa10.96□□□□□ -0.65
CD44-206ENST00000415148 PCDHA8Q9Y5H6 950 aa10.96□□□□□ -0.65
CD44-206ENST00000415148 SAR1BQ9Y6B6 198 aa10.96□□□□□ -0.65
CD44-206ENST00000415148 ANO9A1A5B4 782 aa10.96□□□□□ -0.66
CD44-206ENST00000415148 EIF3CLB5ME19 914 aaKnown RBP10.96□□□□□ -0.66
CD44-206ENST00000415148 ZNF185O15231 689 aa10.96□□□□□ -0.66
CD44-206ENST00000415148 HOXA7P31268 230 aaPredicted RBP10.96□□□□□ -0.66
CD44-206ENST00000415148 NOP2P46087 812 aaKnown RBP10.96□□□□□ -0.66
CD44-206ENST00000415148 HSP90B2PQ58FF3 399 aa10.96□□□□□ -0.66
CD44-206ENST00000415148 TTI2Q6NXR4 508 aa10.96□□□□□ -0.66
CD44-206ENST00000415148 PACS2Q86VP3 889 aa10.96□□□□□ -0.66
CD44-206ENST00000415148 EIF3CQ99613 913 aaKnown RBP10.96□□□□□ -0.66
CD44-206ENST00000415148 EXOC1Q9NV70 894 aa10.96□□□□□ -0.66
CD44-206ENST00000415148 CASZ1Q86V15 1759 aa10.96□□□□□ -0.66
CD44-206ENST00000415148 CCDC88AQ3V6T2 1871 aa10.96□□□□□ -0.66
CD44-206ENST00000415148 A0A1W2PQJ5 194 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 PDE2AO00408 941 aaPredicted RBP10.95□□□□□ -0.66
CD44-206ENST00000415148 IVLP07476 585 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 CCNE1P24864 410 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 KLK7P49862 253 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 ZBED6P86452 979 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 DDB1Q16531 1140 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 CCDC122Q5T0U0 273 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 C12orf60Q5U649 245 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 GPIHBP1Q8IV16 184 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 PNMA1Q8ND90 353 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 TRIM47Q96LD4 638 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 TTYH3Q9C0H2 523 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 EHD4Q9H223 541 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 DUSP10Q9Y6W6 482 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 MYH14Q7Z406 1995 aaKnown RBP10.95□□□□□ -0.66
CD44-206ENST00000415148 FAM205AQ6ZU69 1335 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 RNF40O75150 1001 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 PRPF6O94906 941 aaKnown RBP10.95□□□□□ -0.66
CD44-206ENST00000415148 AARSP49588 968 aaKnown RBP eCLIP10.95□□□□□ -0.66
CD44-206ENST00000415148 RPS8P62241 208 aaKnown RBP10.95□□□□□ -0.66
CD44-206ENST00000415148 TFAP4Q01664 338 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 ORC2Q13416 577 aaPredicted RBP10.95□□□□□ -0.66
CD44-206ENST00000415148 LEKR1Q6ZMV7 388 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 C7orf25Q9BPX7 421 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 TUBGCP2Q9BSJ2 902 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 IL17RBQ9NRM6 502 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 BARHL2Q9NY43 387 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 MKRN1Q9UHC7 482 aaKnown RBP10.95□□□□□ -0.66
CD44-206ENST00000415148 MAD2L2Q9UI95 211 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 KAT6BQ8WYB5 2073 aa10.95□□□□□ -0.66
CD44-206ENST00000415148 COL5A3P25940 1745 aaPredicted RBP10.94□□□□□ -0.66
CD44-206ENST00000415148 ROBO1Q9Y6N7 1651 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 COL16A1Q07092 1604 aaPredicted RBP10.94□□□□□ -0.66
CD44-206ENST00000415148 ROBO3Q96MS0 1386 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 IPO7O95373 1038 aaKnown RBP10.94□□□□□ -0.66
CD44-206ENST00000415148 AMPD3Q01432 767 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 CSGALNACT2Q8N6G5 542 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 RASSF8Q8NHQ8 419 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 LRRC15Q8TF66 581 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 P2RX5Q93086 422 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 DUSP9Q99956 384 aaKnown RBP10.94□□□□□ -0.66
CD44-206ENST00000415148 TSGA10Q9BZW7 698 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 LACRTQ9GZZ8 138 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 RABEP2Q9H5N1 569 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 RASSF10A6NK89 507 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 TBC1D8BQ0IIM8 1120 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 IQCEQ6IPM2 695 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 C3orf67Q6ZVT6 689 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 KIAA1328Q86T90 577 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 ZSCAN29Q8IWY8 852 aaPredicted RBP10.94□□□□□ -0.66
CD44-206ENST00000415148 IPO4Q8TEX9 1081 aaKnown RBP10.94□□□□□ -0.66
CD44-206ENST00000415148 RUBCNQ92622 972 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 CELF1Q92879 486 aaKnown RBP10.94□□□□□ -0.66
CD44-206ENST00000415148 JAKMIP2Q96AA8 810 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 PURBQ96QR8 312 aaKnown RBP10.94□□□□□ -0.66
CD44-206ENST00000415148 ERGIC2Q96RQ1 377 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 NYXQ9GZU5 481 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 MCM9Q9NXL9 1143 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 HPCAL4Q9UM19 191 aa10.94□□□□□ -0.66
CD44-206ENST00000415148 PALM3A6NDB9 673 aaPredicted RBP10.93□□□□□ -0.66
CD44-206ENST00000415148 PP2D1A8MPX8 630 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 AGPSO00116 658 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 STXBP3O00186 592 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 CYP2D6P10635 497 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 SMARCA1P28370 1054 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 TNNT3P45378 269 aaPredicted RBP10.93□□□□□ -0.66
CD44-206ENST00000415148 EZH2Q15910 746 aaKnown RBP10.93□□□□□ -0.66
CD44-206ENST00000415148 KRT25Q7Z3Z0 450 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 AMOTL1Q8IY63 956 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 STAG2Q8N3U4 1231 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 PLIN2Q99541 437 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 ZMYND12Q9H0C1 365 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 TMEM60Q9H2L4 133 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 NHEJ1Q9H9Q4 299 aaPredicted RBP10.93□□□□□ -0.66
CD44-206ENST00000415148 SPATA31A1Q5TZJ5 1347 aa10.93□□□□□ -0.66
CD44-206ENST00000415148 B4DLN1 442 aa10.92□□□□□ -0.66
CD44-206ENST00000415148 PRLRP16471 622 aa10.92□□□□□ -0.66
CD44-206ENST00000415148 TRIM21P19474 475 aaKnown RBP10.92□□□□□ -0.66
CD44-206ENST00000415148 HNRNPH3P31942 346 aaKnown RBP10.92□□□□□ -0.66
CD44-206ENST00000415148 ITIH3Q06033 890 aa10.92□□□□□ -0.66
CD44-206ENST00000415148 CABP7Q86V35 215 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms