RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 FGD4Q96M96 766 aa24.17■■□□□ 1.46
VSX1-204ENST00000409958 LRRC2Q9BYS8 371 aa24.17■■□□□ 1.46
VSX1-204ENST00000409958 VAT1LQ9HCJ6 419 aa24.17■■□□□ 1.46
VSX1-204ENST00000409958 OGDHLQ9ULD0 1010 aa24.17■■□□□ 1.46
VSX1-204ENST00000409958 SYNGAP1Q96PV0 1343 aa24.17■■□□□ 1.46
VSX1-204ENST00000409958 CNGA1P29973 690 aa24.16■■□□□ 1.46
VSX1-204ENST00000409958 QRICH1Q2TAL8 776 aa24.16■■□□□ 1.46
VSX1-204ENST00000409958 NSMFQ6X4W1 530 aa24.16■■□□□ 1.46
VSX1-204ENST00000409958 UBE2Q1Q7Z7E8 422 aa24.16■■□□□ 1.46
VSX1-204ENST00000409958 SGMS1Q86VZ5 419 aa24.16■■□□□ 1.46
VSX1-204ENST00000409958 ANKLE1Q8NAG6 615 aa24.16■■□□□ 1.46
VSX1-204ENST00000409958 CLEC4DQ8WXI8 215 aa24.16■■□□□ 1.46
VSX1-204ENST00000409958 MTMR8Q96EF0 704 aa24.16■■□□□ 1.46
VSX1-204ENST00000409958 DDX20Q9UHI6 824 aaKnown RBP24.16■■□□□ 1.46
VSX1-204ENST00000409958 SNX14Q9Y5W7 946 aa24.16■■□□□ 1.46
VSX1-204ENST00000409958 PDE4DIPQ5VU43 2346 aa24.16■■□□□ 1.46
VSX1-204ENST00000409958 NFIBO00712 420 aa24.15■■□□□ 1.46
VSX1-204ENST00000409958 CNTN2Q02246 1040 aa24.15■■□□□ 1.46
VSX1-204ENST00000409958 PRAMEF19Q5SWL8 479 aa24.15■■□□□ 1.46
VSX1-204ENST00000409958 CTCFLQ8NI51 663 aaPredicted RBP24.15■■□□□ 1.46
VSX1-204ENST00000409958 RIOX1Q9H6W3 641 aa24.15■■□□□ 1.46
VSX1-204ENST00000409958 SEPT4O43236 478 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 FARP2O94887 1054 aaPredicted RBP24.14■■□□□ 1.46
VSX1-204ENST00000409958 CALM1P0DP23 149 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 CALM2P0DP24 149 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 CALM3P0DP25 149 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 KIF5BP33176 963 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 USH1GQ495M9 461 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 FBXO11Q86XK2 927 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 MYL10Q9BUA6 226 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 USP26Q9BXU7 913 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 CNPY2Q9Y2B0 182 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 SLC12A7Q9Y666 1083 aa24.14■■□□□ 1.46
VSX1-204ENST00000409958 ABCB11O95342 1321 aa24.14■■□□□ 1.45
VSX1-204ENST00000409958 BAATQ14032 418 aaPredicted RBP24.13■■□□□ 1.45
VSX1-204ENST00000409958 SLC35G1Q2M3R5 365 aa24.13■■□□□ 1.45
VSX1-204ENST00000409958 RGS22Q8NE09 1264 aa24.13■■□□□ 1.45
VSX1-204ENST00000409958 MAF1Q9H063 256 aa24.13■■□□□ 1.45
VSX1-204ENST00000409958 SOWAHBA6NEL2 793 aa24.12■■□□□ 1.45
VSX1-204ENST00000409958 ZBTB5O15062 677 aa24.12■■□□□ 1.45
VSX1-204ENST00000409958 SNAI1O95863 264 aaPredicted RBP24.12■■□□□ 1.45
VSX1-204ENST00000409958 TCEANC2Q96MN5 208 aa24.12■■□□□ 1.45
VSX1-204ENST00000409958 JAKMIP1Q96N16 626 aaKnown RBP24.12■■□□□ 1.45
VSX1-204ENST00000409958 AMNQ9BXJ7 453 aa24.12■■□□□ 1.45
VSX1-204ENST00000409958 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.12■■□□□ 1.45
VSX1-204ENST00000409958 MYH6P13533 1939 aa24.12■■□□□ 1.45
VSX1-204ENST00000409958 BAZ2BQ9UIF8 2168 aaKnown RBP24.11■■□□□ 1.45
VSX1-204ENST00000409958 PTPDC1A2A3K4 754 aa24.11■■□□□ 1.45
VSX1-204ENST00000409958 ASB14A6NK59 587 aa24.11■■□□□ 1.45
VSX1-204ENST00000409958 CYTH3O43739 400 aa24.11■■□□□ 1.45
VSX1-204ENST00000409958 ZNF865P0CJ78 1059 aaPredicted RBP24.11■■□□□ 1.45
VSX1-204ENST00000409958 SMARCA1P28370 1054 aa24.11■■□□□ 1.45
VSX1-204ENST00000409958 GNAQP50148 359 aa24.11■■□□□ 1.45
VSX1-204ENST00000409958 RNF207Q6ZRF8 634 aa24.11■■□□□ 1.45
VSX1-204ENST00000409958 ARMCX2Q7L311 632 aa24.11■■□□□ 1.45
VSX1-204ENST00000409958 LZTS2Q9BRK4 669 aa24.11■■□□□ 1.45
VSX1-204ENST00000409958 PSMA5P28066 241 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 RPS6P62753 249 aaKnown RBP24.1■■□□□ 1.45
VSX1-204ENST00000409958 BLOC1S2Q6QNY1 142 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 SYNE3Q6ZMZ3 975 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 CCDC144CPQ8IYA2 1237 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 SPZ1Q9BXG8 430 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 ABHD16BQ9H3Z7 469 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 ADD3Q9UEY8 706 aaKnown RBP24.1■■□□□ 1.45
VSX1-204ENST00000409958 MRPL11Q9Y3B7 192 aaKnown RBP24.1■■□□□ 1.45
VSX1-204ENST00000409958 MNX1P50219 401 aaPredicted RBP24.1■■□□□ 1.45
VSX1-204ENST00000409958 TRAF1Q13077 416 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 SLC30A10Q6XR72 485 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 HOMER1Q86YM7 354 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 MCF2L2Q86YR7 1114 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 PIGSQ96S52 555 aa24.1■■□□□ 1.45
VSX1-204ENST00000409958 ASTN1O14525 1302 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 LOC102724159A0A0B4J2E5 919 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 PNMA6FA0A0J9YX94 578 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 PPP1R11O60927 126 aaPredicted RBP24.09■■□□□ 1.45
VSX1-204ENST00000409958 AKR1A1P14550 325 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 CPA1P15085 419 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 RXRAP19793 462 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 CALML3P27482 149 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 ACVR2BQ13705 512 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 PWP2Q15269 919 aaKnown RBP24.09■■□□□ 1.45
VSX1-204ENST00000409958 APOA5Q6Q788 366 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 NECAB2Q7Z6G3 386 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 FANCBQ8NB91 859 aa24.09■■□□□ 1.45
VSX1-204ENST00000409958 PAWRQ96IZ0 340 aaKnown RBP24.09■■□□□ 1.45
VSX1-204ENST00000409958 MCM3APO60318 1980 aa24.08■■□□□ 1.45
VSX1-204ENST00000409958 FRMPD3Q5JV73 1810 aa24.08■■□□□ 1.45
VSX1-204ENST00000409958 LCTP09848 1927 aa24.08■■□□□ 1.45
VSX1-204ENST00000409958 EIF5BO60841 1220 aaKnown RBP24.08■■□□□ 1.44
VSX1-204ENST00000409958 MICU3Q86XE3 530 aa24.08■■□□□ 1.44
VSX1-204ENST00000409958 MORC4Q8TE76 937 aa24.08■■□□□ 1.44
VSX1-204ENST00000409958 DIS3LQ8TF46 1054 aaKnown RBP24.08■■□□□ 1.44
VSX1-204ENST00000409958 PURBQ96QR8 312 aaKnown RBP24.08■■□□□ 1.44
VSX1-204ENST00000409958 ZHX1Q9UKY1 873 aaPredicted RBP24.08■■□□□ 1.44
VSX1-204ENST00000409958 FAM184BQ9ULE4 1060 aa24.08■■□□□ 1.44
VSX1-204ENST00000409958 PCDHA1Q9Y5I3 950 aa24.08■■□□□ 1.44
VSX1-204ENST00000409958 RARBP10826 455 aa24.07■■□□□ 1.44
VSX1-204ENST00000409958 CASTP20810 708 aaKnown RBP24.07■■□□□ 1.44
VSX1-204ENST00000409958 RPS6KB1P23443 525 aa24.07■■□□□ 1.44
VSX1-204ENST00000409958 ALDH5A1P51649 535 aaPredicted RBP24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms