RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TRIM55Q9BYV6 548 aa14.02□□□□□ -0.16
COL6A3-206ENST00000409809 LOC102724159A0A0B4J2E5 919 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 ART3Q13508 389 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 MORC3Q14149 939 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 PWP2Q15269 919 aaKnown RBP14.02□□□□□ -0.17
COL6A3-206ENST00000409809 ADRM1Q16186 407 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 DAB2IPQ5VWQ8 1189 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 LAD1O00515 517 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 SLC20A2Q08357 652 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 CFAP36Q96G28 342 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 HSPA13P48723 471 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 INAQ16352 499 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 GRAMD1BQ3KR37 738 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 NXNQ6DKJ4 435 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 ING2Q9H160 280 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 MPP6Q9NZW5 540 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 SENP1Q9P0U3 644 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 GSTA1P08263 222 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 STAT2P52630 851 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 NCAPH2Q6IBW4 605 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 KRT25Q7Z3Z0 450 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 MTBPQ96DY7 904 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 PPCSQ9HAB8 311 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 DONSONQ9NYP3 566 aa14.02□□□□□ -0.17
COL6A3-206ENST00000409809 KIF1BO60333 1816 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 ADCY3O60266 1144 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 EFCAB14O75071 495 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 CD109Q6YHK3 1445 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 USP40Q9NVE5 1235 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 GNGT2O14610 69 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 BPIFB4P59827 614 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 YIPF3Q9GZM5 350 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 TCHHQ07283 1943 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 CFAP74Q9C0B2 1584 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 CEP85Q6P2H3 762 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 SEMA3FQ13275 785 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 MYD88Q99836 296 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 HADHQ16836 314 aaKnown RBP14.01□□□□□ -0.17
COL6A3-206ENST00000409809 RRAGAQ7L523 313 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 ARHGEF11O15085 1522 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 IQANK1A0A1B0GTG1 560 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 GMNCA6NCL1 334 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 HAND2P61296 217 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 CENPUQ71F23 418 aa14.01□□□□□ -0.17
COL6A3-206ENST00000409809 TRIM56Q9BRZ2 755 aaKnown RBP14.01□□□□□ -0.17
COL6A3-206ENST00000409809 SHANK2Q9UPX8 1470 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 GPC4O75487 556 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 SRGAP2BP0DMP2 458 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 PARD6BQ9BYG5 372 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 CDK13Q14004 1512 aaKnown RBP14□□□□□ -0.17
COL6A3-206ENST00000409809 CRLF3Q8IUI8 442 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 THOC1Q96FV9 657 aaKnown RBP14□□□□□ -0.17
COL6A3-206ENST00000409809 ABCC2Q92887 1545 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 CCDC15Q0P6D6 951 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 TMEM132EQ6IEE7 984 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 SARM1Q6SZW1 724 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 ENOX1Q8TC92 643 aaKnown RBP14□□□□□ -0.17
COL6A3-206ENST00000409809 SEMA3EO15041 775 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 UTP6Q9NYH9 597 aaKnown RBP14□□□□□ -0.17
COL6A3-206ENST00000409809 HEXIM1O94992 359 aaKnown RBP14□□□□□ -0.17
COL6A3-206ENST00000409809 DDX54Q8TDD1 881 aaKnown RBP14□□□□□ -0.17
COL6A3-206ENST00000409809 ZMYND12Q9H0C1 365 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 SLC24A3Q9HC58 644 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 HGSO14964 777 aaPredicted RBP14□□□□□ -0.17
COL6A3-206ENST00000409809 TRPA1O75762 1119 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 SYNGAP1Q96PV0 1343 aa14□□□□□ -0.17
COL6A3-206ENST00000409809 FLOT2Q14254 428 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 KCTD16Q68DU8 428 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 BPIFA3Q9BQP9 254 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 CNGB3Q9NQW8 809 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 CD2APQ9Y5K6 639 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 ANO9A1A5B4 782 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 DAPK3O43293 454 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 DZIP3Q86Y13 1208 aaKnown RBP13.99□□□□□ -0.17
COL6A3-206ENST00000409809 PRDM11Q9NQV5 511 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 STRNO43815 780 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 SERPINB1P30740 379 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 ABCF3Q9NUQ8 709 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 BICRAQ9NZM4 1560 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 TFAP4Q01664 338 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 ARHGAP44Q17R89 818 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 TTC38Q5R3I4 469 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 BRIP1Q9BX63 1249 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 GRID2IPA4D2P6 1211 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 RNF169Q8NCN4 708 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 SYBUQ9NX95 663 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 PPIP5K1Q6PFW1 1433 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 POLR2BP30876 1174 aaKnown RBP13.99□□□□□ -0.17
COL6A3-206ENST00000409809 SYT2Q8N9I0 419 aaPredicted RBP13.99□□□□□ -0.17
COL6A3-206ENST00000409809 SGSM2O43147 1006 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 CASP14P31944 242 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 S100A5P33763 92 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 RAB14P61106 215 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 RCN2Q14257 317 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 TRPC6Q9Y210 931 aa13.99□□□□□ -0.17
COL6A3-206ENST00000409809 ADKP55263 362 aaKnown RBP13.98□□□□□ -0.17
COL6A3-206ENST00000409809 MYO1EQ12965 1108 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 UBE3BQ7Z3V4 1068 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 ATP6V0A4Q9HBG4 840 aa13.98□□□□□ -0.17
COL6A3-206ENST00000409809 STK17AQ9UEE5 414 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms