RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 USH1CQ9Y6N9 552 aa8.1□□□□□ -1.11
SCN9A-202ENST00000409435 FERP16591 822 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 CATSPER4Q7RTX7 472 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 MYOCDQ8IZQ8 938 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 CCDC114Q96M63 670 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 SMC6Q96SB8 1091 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 GPRC5DQ9NZD1 345 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 ENTPD3O75355 529 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 XRCC6P12956 609 aaKnown RBP eCLIP8.09□□□□□ -1.11
SCN9A-202ENST00000409435 LACTBP83111 547 aaPredicted RBP8.09□□□□□ -1.11
SCN9A-202ENST00000409435 PPP2R5AQ15172 486 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 PROSER3Q2NL68 480 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 TKFCQ3LXA3 575 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 ZNF569Q5MCW4 686 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 KRT25Q7Z3Z0 450 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 SPATS2LQ9NUQ6 558 aaKnown RBP8.09□□□□□ -1.11
SCN9A-202ENST00000409435 HSPD1P10809 573 aaKnown RBP8.09□□□□□ -1.11
SCN9A-202ENST00000409435 CAPN2P17655 700 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 TWF2Q6IBS0 349 aaKnown RBP8.09□□□□□ -1.11
SCN9A-202ENST00000409435 TPH2Q8IWU9 490 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 CACNA2D3Q8IZS8 1091 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 SEPT8Q92599 483 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 USP31Q70CQ4 1352 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 PSAPP07602 524 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 MCM7P33993 719 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 PAFAH1B1P43034 410 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 ATXN3P54252 364 aaPredicted RBP8.09□□□□□ -1.11
SCN9A-202ENST00000409435 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.09□□□□□ -1.11
SCN9A-202ENST00000409435 NSUN6Q8TEA1 469 aaKnown RBP8.09□□□□□ -1.11
SCN9A-202ENST00000409435 PUS3Q9BZE2 481 aaKnown RBP8.09□□□□□ -1.11
SCN9A-202ENST00000409435 SLC28A3Q9HAS3 691 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 GINM1Q9NU53 330 aa8.09□□□□□ -1.11
SCN9A-202ENST00000409435 SCAF8Q9UPN6 1271 aaKnown RBP8.09□□□□□ -1.11
SCN9A-202ENST00000409435 INO80B-WBP1J3KQ70 363 aa8.09□□□□□ -1.12
SCN9A-202ENST00000409435 HSF2BPO75031 334 aa8.09□□□□□ -1.12
SCN9A-202ENST00000409435 CYP2E1P05181 493 aaPredicted RBP8.09□□□□□ -1.12
SCN9A-202ENST00000409435 TMED8Q6PL24 325 aaPredicted RBP8.09□□□□□ -1.12
SCN9A-202ENST00000409435 ANKRD44Q8N8A2 993 aa8.09□□□□□ -1.12
SCN9A-202ENST00000409435 SPATA33Q96N06 139 aa8.09□□□□□ -1.12
SCN9A-202ENST00000409435 LRRIQ4A6NIV6 560 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 FIBPO43427 364 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 TNNC2P02585 160 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 AMHP03971 560 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 PDE6AP16499 860 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 CLCN1P35523 988 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 LIN9Q5TKA1 542 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 DTHD1Q6ZMT9 781 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 SHCBP1Q8NEM2 672 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 BRF1Q92994 677 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 DDX27Q96GQ7 796 aaKnown RBP8.08□□□□□ -1.12
SCN9A-202ENST00000409435 NOX5Q96PH1 765 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 PPP1R16BQ96T49 567 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 TPCN1Q9ULQ1 816 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 TNFAIP2Q03169 654 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 PPP2R5DQ14738 602 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 AAK1Q2M2I8 961 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 POTEDQ86YR6 584 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 ZNF784Q8NCA9 323 aaPredicted RBP8.08□□□□□ -1.12
SCN9A-202ENST00000409435 FRMD4BQ9Y2L6 1034 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 GSTTP1A0A1W2PQM5 241 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 PCP11498 1178 aaKnown RBP8.08□□□□□ -1.12
SCN9A-202ENST00000409435 MCM4P33991 863 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 ANO1Q5XXA6 986 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 THEM5Q8N1Q8 247 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 PRPF38AQ8NAV1 312 aaKnown RBP8.08□□□□□ -1.12
SCN9A-202ENST00000409435 FAM167AQ96KS9 214 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 PPP1R12CQ9BZL4 782 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 DNM3Q9UQ16 869 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 CDHR2Q9BYE9 1310 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 RIOK3O14730 519 aaKnown RBP8.08□□□□□ -1.12
SCN9A-202ENST00000409435 PCK1P35558 622 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 GOLGA8FQ08AF8 430 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 GOLGA8DPQ0D2H9 430 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 MAATS1Q7Z4T9 603 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 CCDC65Q8IXS2 484 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 UPF3BQ9BZI7 483 aaKnown RBP8.08□□□□□ -1.12
SCN9A-202ENST00000409435 VCX3BQ9H321 246 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 SATB2Q9UPW6 733 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 LMTK2Q8IWU2 1503 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 PTPRUQ92729 1446 aa8.08□□□□□ -1.12
SCN9A-202ENST00000409435 STX10O60499 249 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 GH1P01241 217 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 TXNP10599 105 aaKnown RBP8.07□□□□□ -1.12
SCN9A-202ENST00000409435 EIF2AK2P19525 551 aaKnown RBP8.07□□□□□ -1.12
SCN9A-202ENST00000409435 PTPREP23469 700 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 DYNLL1P63167 89 aaKnown RBP8.07□□□□□ -1.12
SCN9A-202ENST00000409435 PRR16Q569H4 304 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 IER5Q5VY09 327 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 DEFB128Q7Z7B8 93 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 REXO1Q8N1G1 1221 aaKnown RBP8.07□□□□□ -1.12
SCN9A-202ENST00000409435 PDCD7Q8N8D1 485 aaKnown RBP8.07□□□□□ -1.12
SCN9A-202ENST00000409435 DEFB118Q96PH6 123 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 TMEM39BQ9GZU3 492 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 MAP3K20Q9NYL2 800 aaKnown RBP8.07□□□□□ -1.12
SCN9A-202ENST00000409435 LIG4P49917 911 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 ASIC1P78348 528 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 MXRA7P84157 204 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 MAP7Q14244 749 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 ZNF697Q5TEC3 545 aa8.07□□□□□ -1.12
SCN9A-202ENST00000409435 PDXDC2PQ6P474 469 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms