RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 SLC35F6Q8N357 371 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 ACRBPQ8NEB7 543 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 MTMR8Q96EF0 704 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 NUP58Q9BVL2 599 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 EPC1Q9H2F5 836 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 TFCP2L1Q9NZI6 479 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 BRWD3Q6RI45 1802 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 TARSL2A2RTX5 802 aaKnown RBP4.34□□□□□ -1.71
RTN4-209ENST00000405240 CTAGE9A4FU28 777 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 EIF3CLB5ME19 914 aaKnown RBP4.34□□□□□ -1.71
RTN4-209ENST00000405240 TULP2O00295 520 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 KIF5CO60282 957 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 CCNE1P24864 410 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 CDC25AP30304 524 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 STAT6P42226 847 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 DNM2P50570 870 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 LONRF2Q1L5Z9 754 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 TMEM119Q4V9L6 283 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 MUM1L1Q5H9M0 696 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 TPTE2Q6XPS3 522 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 KRT25Q7Z3Z0 450 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 CCDC170Q8IYT3 715 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 OR8K1Q8NGG5 319 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 CCDC12Q8WUD4 166 aaPredicted RBP4.34□□□□□ -1.71
RTN4-209ENST00000405240 RUBCNQ92622 972 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 SETDB2Q96T68 719 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 EIF3CQ99613 913 aaKnown RBP4.34□□□□□ -1.71
RTN4-209ENST00000405240 CHP1Q99653 195 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 NAPGQ99747 312 aaPredicted RBP4.34□□□□□ -1.71
RTN4-209ENST00000405240 TRIM9Q9C026 710 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 HAUS4Q9H6D7 363 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 VIPAS39Q9H9C1 493 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 BLOC1S4Q9NUP1 217 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 SIK3Q9Y2K2 1263 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 EPN1Q9Y6I3 576 aaPredicted RBP4.34□□□□□ -1.71
RTN4-209ENST00000405240 SLX4Q8IY92 1834 aa4.34□□□□□ -1.71
RTN4-209ENST00000405240 USP17L3A6NCW0 530 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 USP17L4A6NCW7 530 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 TRIM49BA6NDI0 452 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 TSPY2A6NKD2 308 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 N4BP3O15049 544 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 PRLRP16471 622 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 ATP2B1P20020 1258 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 HOXA10P31260 410 aaPredicted RBP4.34□□□□□ -1.72
RTN4-209ENST00000405240 AARSP49588 968 aaKnown RBP eCLIP4.34□□□□□ -1.725e-8■■■□□ 16.6
RTN4-209ENST00000405240 ASTE1Q2TB18 679 aaPredicted RBP4.34□□□□□ -1.72
RTN4-209ENST00000405240 USP17L1Q7RTZ2 530 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 ARHGEF1Q92888 912 aaKnown RBP4.34□□□□□ -1.72
RTN4-209ENST00000405240 GPKOWQ92917 476 aaPredicted RBP eCLIP4.34□□□□□ -1.72
RTN4-209ENST00000405240 P2RX5Q93086 422 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 DYNLL2Q96FJ2 89 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 PNMA5Q96PV4 448 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 MCM9Q9NXL9 1143 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 TAB2Q9NYJ8 693 aa4.34□□□□□ -1.72
RTN4-209ENST00000405240 SRP68Q9UHB9 627 aaKnown RBP4.34□□□□□ -1.72
RTN4-209ENST00000405240 ZHX1Q9UKY1 873 aaPredicted RBP4.34□□□□□ -1.72
RTN4-209ENST00000405240 PVALEFA0A1B0GWK0 134 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 H3BQF6 201 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 RBAK-RBAKDNI3L0D1 243 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 LDHBP07195 334 aaKnown RBP4.33□□□□□ -1.72
RTN4-209ENST00000405240 CDK8P49336 464 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 PIP4K2BP78356 416 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 GRB10Q13322 594 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 PDIA5Q14554 519 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 ZNF569Q5MCW4 686 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 ANKRD40Q6AI12 368 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 KLHL10Q6JEL2 608 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 PPP1R18Q6NYC8 613 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 KIAA0895Q8NCT3 520 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 STAMQ92783 540 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 ARFGAP3Q9NP61 516 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 LZTFL1Q9NQ48 299 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 ANO9A1A5B4 782 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 PP2D1A8MPX8 630 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 PJA2O43164 708 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 ONECUT3O60422 494 aaPredicted RBP4.33□□□□□ -1.72
RTN4-209ENST00000405240 OR52Z1P0C646 297 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 PLCG1P19174 1290 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 CCT6AP40227 531 aaKnown RBP4.33□□□□□ -1.72
RTN4-209ENST00000405240 ZBED6P86452 979 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 SMC1AQ14683 1233 aaKnown RBP4.33□□□□□ -1.72
RTN4-209ENST00000405240 TXNRD1Q16881 649 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 INF2Q27J81 1249 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 DPY19L2P1Q6NXN4 242 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 NBPF5PQ86XG9 351 aaPredicted RBP4.33□□□□□ -1.72
RTN4-209ENST00000405240 EXOC4Q96A65 974 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 MBOAT7Q96N66 472 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 VPS16Q9H269 839 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 SEMA6BQ9H3T3 888 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 EXOC1Q9NV70 894 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 STK17AQ9UEE5 414 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 TAOK2Q9UL54 1235 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 MYO6Q9UM54 1294 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 PCDHA2Q9Y5H9 948 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 BICDL2A1A5D9 508 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 RCCD1A6NED2 376 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 ZNF263O14978 683 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 BAG3O95817 575 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 LDHCP07864 332 aa4.33□□□□□ -1.72
RTN4-209ENST00000405240 KRT9P35527 623 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms