RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 DYNC1I1O14576 645 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 PFKFB1P16118 471 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 MAGEA1P43355 309 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 CLIC6Q96NY7 704 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 ADAT2Q7Z6V5 191 aaKnown RBP12.48□□□□□ -0.41
TTC28-201ENST00000397906 FAM76AQ8TAV0 307 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 RNF181Q9P0P0 153 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 KRT15P19012 456 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 MORC3Q14149 939 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 ARHGEF25Q86VW2 580 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 SLC7A3Q8WY07 619 aa12.48□□□□□ -0.41
TTC28-201ENST00000397906 HOXA13P31271 388 aaPredicted RBP12.47□□□□□ -0.41
TTC28-201ENST00000397906 EVCP57679 992 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 GPATCH11Q8N954 259 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 NKX1-1Q15270 411 aaPredicted RBP12.47□□□□□ -0.41
TTC28-201ENST00000397906 SYMPKQ92797 1274 aaKnown RBP12.47□□□□□ -0.41
TTC28-201ENST00000397906 BBOX1O75936 387 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 VPS41P49754 854 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 SYCE1Q8N0S2 351 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 FTOQ9C0B1 505 aaKnown RBP eCLIP12.47□□□□□ -0.41
TTC28-201ENST00000397906 RSRC2Q7L4I2 434 aaKnown RBP12.47□□□□□ -0.41
TTC28-201ENST00000397906 ANTXR1Q9H6X2 564 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 MNAT1P51948 309 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 SRGAP1Q7Z6B7 1085 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 RTKN2Q8IZC4 609 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 RPS6KA1Q15418 735 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 CEP85LQ5SZL2 805 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 CTAGE3PQ8IX95 158 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 PIGSQ96S52 555 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 GKAP1Q5VSY0 366 aaPredicted RBP12.47□□□□□ -0.41
TTC28-201ENST00000397906 AFAP1L2Q8N4X5 818 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 SERPINB13Q9UIV8 391 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 TYW5A2RUC4 315 aaKnown RBP12.47□□□□□ -0.41
TTC28-201ENST00000397906 GNA14O95837 355 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 POLR2FP61218 127 aaKnown RBP12.47□□□□□ -0.41
TTC28-201ENST00000397906 NLRP10Q86W26 655 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 CACYBPQ9HB71 228 aaKnown RBP12.47□□□□□ -0.41
TTC28-201ENST00000397906 KCNG1Q9UIX4 513 aa12.47□□□□□ -0.41
TTC28-201ENST00000397906 MECOMQ03112 1051 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 MYSM1Q5VVJ2 828 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 MGARPQ8TDB4 240 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 PTGDRQ13258 359 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 MTERF2Q49AM1 385 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 PRPF31Q8WWY3 499 aaKnown RBP12.46□□□□□ -0.41
TTC28-201ENST00000397906 KMT5AQ9NQR1 393 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 ARMCX3Q9UH62 379 aaPredicted RBP12.46□□□□□ -0.41
TTC28-201ENST00000397906 ZNF215Q9UL58 517 aaPredicted RBP12.46□□□□□ -0.41
TTC28-201ENST00000397906 ADAM9Q13443 819 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 USP17L2Q6R6M4 530 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 COA7Q96BR5 231 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 IRAK4Q9NWZ3 460 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 CHD1O14646 1710 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 ESYT2A0FGR8 921 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 EN1Q05925 392 aaPredicted RBP12.46□□□□□ -0.41
TTC28-201ENST00000397906 UBE2SQ16763 222 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 TTBK2Q6IQ55 1244 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 ANKRD36BP1Q96IX9 119 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 PCIF1Q9H4Z3 704 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 CEP170P1Q96L14 293 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 TPCN1Q9ULQ1 816 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 FNDC3AQ9Y2H6 1198 aaKnown RBP12.46□□□□□ -0.41
TTC28-201ENST00000397906 TACC3Q9Y6A5 838 aa12.46□□□□□ -0.41
TTC28-201ENST00000397906 SATB1Q01826 763 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 PARD3BQ8TEW8 1205 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 ZNF274Q96GC6 653 aaPredicted RBP12.46□□□□□ -0.42
TTC28-201ENST00000397906 KRT12Q99456 494 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 BMP3P12645 472 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 SSH3Q8TE77 659 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 ZKSCAN5Q9Y2L8 839 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 PCDHB4Q9Y5E5 795 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 SASH1O94885 1247 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 TFAMQ00059 246 aaKnown RBP12.46□□□□□ -0.42
TTC28-201ENST00000397906 C17orf53Q8N3J3 647 aaPredicted RBP12.46□□□□□ -0.42
TTC28-201ENST00000397906 DCLK2Q8N568 766 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 MASTLQ96GX5 879 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 RBSNQ9H1K0 784 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 CEP128Q6ZU80 1094 aa12.46□□□□□ -0.42
TTC28-201ENST00000397906 ZNF277Q9NRM2 450 aaPredicted RBP12.46□□□□□ -0.42
TTC28-201ENST00000397906 LARSQ9P2J5 1176 aaKnown RBP12.46□□□□□ -0.42
TTC28-201ENST00000397906 XPAP23025 273 aaPredicted RBP12.45□□□□□ -0.42
TTC28-201ENST00000397906 TAOK1Q7L7X3 1001 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 CEP57Q86XR8 500 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 A6NJR5 290 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 BNIP3LO60238 219 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 KIF11P52732 1056 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 PPP2R5AQ15172 486 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 SYDE2Q5VT97 1194 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 CDC42BPGQ6DT37 1551 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 IVLP07476 585 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 ZNF653Q96CK0 615 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 COL4A3BPQ9Y5P4 624 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 HADHQ16836 314 aaKnown RBP12.45□□□□□ -0.42
TTC28-201ENST00000397906 SDCCAG8Q86SQ7 713 aaPredicted RBP12.45□□□□□ -0.42
TTC28-201ENST00000397906 CLIC4Q9Y696 253 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 ERBB3P21860 1342 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 SRGAP2CP0DJJ0 459 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 SUSD4Q5VX71 490 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 DBNLQ9UJU6 430 aaKnown RBP12.45□□□□□ -0.42
TTC28-201ENST00000397906 AMFRQ9UKV5 643 aa12.45□□□□□ -0.42
TTC28-201ENST00000397906 TMC4Q7Z404 712 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms