RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 RESP18Q5W5W9 173 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 CIAPIN1Q6FI81 312 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 CDAN1Q8IWY9 1227 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 MB21D2Q8IYB1 491 aaPredicted RBP12.5□□□□□ -0.41
CUX1-204ENST00000393824 NACAP1Q9BZK3 213 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 PLEKHA4Q9H4M7 779 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 MYO1AQ9UBC5 1043 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 GJA3Q9Y6H8 435 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 CDK5RAP2Q96SN8 1893 aa12.5□□□□□ -0.41
CUX1-204ENST00000393824 ASTN2O75129 1339 aaPredicted RBP12.5□□□□□ -0.41
CUX1-204ENST00000393824 KLF18A0A0U1RQI7 1052 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 CLRN2A0PK11 232 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 KIF28PB7ZC32 967 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 PRC1O43663 620 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 CDKL5O76039 1030 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 CDC27P30260 824 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 TCP10Q12799 353 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 NBPF20Q3BBV1 942 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 NCOA7Q8NI08 942 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 HOOK1Q9UJC3 728 aaKnown RBP12.49□□□□□ -0.41
CUX1-204ENST00000393824 NFE2L3Q9Y4A8 694 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 ZC3H4Q9UPT8 1303 aaKnown RBP12.49□□□□□ -0.41
CUX1-204ENST00000393824 A0A1B0GTH6 734 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 LMNB1P20700 586 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 MCM3P25205 808 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 MARCKSP29966 332 aaPredicted RBP12.49□□□□□ -0.41
CUX1-204ENST00000393824 GMPSP49915 693 aaPredicted RBP12.49□□□□□ -0.41
CUX1-204ENST00000393824 MDM2Q00987 491 aaPredicted RBP12.49□□□□□ -0.41
CUX1-204ENST00000393824 PTPAQ15257 358 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 NBPF9Q3BBW0 867 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 RRP12Q5JTH9 1297 aaKnown RBP12.49□□□□□ -0.41
CUX1-204ENST00000393824 MLKLQ8NB16 471 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 NAPGQ99747 312 aaPredicted RBP12.49□□□□□ -0.41
CUX1-204ENST00000393824 ZKSCAN3Q9BRR0 538 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 ATP8A2Q9NTI2 1148 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 FAM198AQ9UFP1 575 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 SERPINA10Q9UK55 444 aa12.49□□□□□ -0.41
CUX1-204ENST00000393824 SPDYE2BA6NHP3 402 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 GOLGA8BA8MQT2 603 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 EBAG9O00559 213 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 SPDYE6P0CI01 402 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 FECHP22830 423 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 LONRF3Q496Y0 759 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 AKNAD1Q5T1N1 836 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 NT5DC1Q5TFE4 455 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 SH3BP5LQ7L8J4 393 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 SAMD7Q7Z3H4 446 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 SLC35F6Q8N357 371 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 IGSF22Q8N9C0 903 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 TACO1Q9BSH4 297 aaKnown RBP12.48□□□□□ -0.41
CUX1-204ENST00000393824 A1CFQ9NQ94 594 aaKnown RBP12.48□□□□□ -0.41
CUX1-204ENST00000393824 ZSWIM5Q9P217 1185 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 DACH1Q9UI36 760 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 HPCAL4Q9UM19 191 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 MNAT1P51948 309 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 MAP9Q49MG5 647 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 RBM26Q5T8P6 1007 aaKnown RBP12.48□□□□□ -0.41
CUX1-204ENST00000393824 C12orf60Q5U649 245 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 KCNV1Q6PIU1 500 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 POTEDQ86YR6 584 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 NOA1Q8NC60 698 aaKnown RBP12.48□□□□□ -0.41
CUX1-204ENST00000393824 CLIC6Q96NY7 704 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 SUFUQ9UMX1 484 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 FAM169AQ9Y6X4 670 aa12.48□□□□□ -0.41
CUX1-204ENST00000393824 SBF1O95248 1867 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 A0A0U1RQJ8 604 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 FAM196BA6NMK8 535 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 NMT2O60551 498 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 AMPD2Q01433 879 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 CPLX2Q6PUV4 134 aaKnown RBP12.47□□□□□ -0.41
CUX1-204ENST00000393824 RAB11FIP4Q86YS3 637 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 CCDC148Q8NFR7 591 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 COG1Q8WTW3 980 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 ATRIPQ8WXE1 791 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 RNF181Q9P0P0 153 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 ANAPC4Q9UJX5 808 aa12.47□□□□□ -0.41
CUX1-204ENST00000393824 DDTLA6NHG4 134 aaPredicted RBP12.46□□□□□ -0.41
CUX1-204ENST00000393824 WNT10BO00744 389 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 DDNO94850 711 aaPredicted RBP12.46□□□□□ -0.41
CUX1-204ENST00000393824 SARSP49591 514 aaKnown RBP12.46□□□□□ -0.41
CUX1-204ENST00000393824 LIG3P49916 1009 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 IRAK1P51617 712 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 USP14P54578 494 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 FMR1Q06787 632 aaKnown RBP eCLIP12.46□□□□□ -0.414e-6■■■■□ 21.6
CUX1-204ENST00000393824 RALYLQ86SE5 291 aaKnown RBP12.46□□□□□ -0.41
CUX1-204ENST00000393824 SLF2Q8IX21 1173 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 STAG1Q8WVM7 1258 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 MRIQ9BWK5 157 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 KCNH3Q9ULD8 1083 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 DDX60LQ5H9U9 1706 aaKnown RBP12.46□□□□□ -0.41
CUX1-204ENST00000393824 TIAM2Q8IVF5 1701 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 PBX1P40424 430 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 HDLBPQ00341 1268 aaKnown RBP12.46□□□□□ -0.41
CUX1-204ENST00000393824 GPR162Q16538 588 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 SHROOM1Q2M3G4 852 aaPredicted RBP12.46□□□□□ -0.41
CUX1-204ENST00000393824 HSP90AA4PQ58FG1 418 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 FAM47AQ5JRC9 791 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 C9orf131Q5VYM1 1079 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 MFSD6Q6ZSS7 791 aa12.46□□□□□ -0.41
CUX1-204ENST00000393824 MICALL2Q8IY33 904 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms