RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 GREM2Q9H772 168 aa16.31■□□□□ 0.2
VPS9D1-201ENST00000389386 KCNJ18B7U540 433 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 PPP1R12BO60237 982 aaPredicted RBP16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 RPSAP08865 295 aaKnown RBP16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 CYP19A1P11511 503 aaPredicted RBP16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 KCNJ12Q14500 433 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 ANKRD20A8PQ5CZ79 823 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 PPP4R3AQ6IN85 833 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 C1orf131Q8NDD1 294 aaKnown RBP16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 CCDC43Q96MW1 224 aaKnown RBP16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 FAM217BQ9NTX9 383 aaPredicted RBP16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 PAPPAQ13219 1627 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 ZNF213O14771 459 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 IFFO1Q0D2I5 559 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 XRCC4Q13426 336 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 DIS3L2Q8IYB7 885 aaKnown RBP16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 PIK3R5Q8WYR1 880 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 CALR3Q96L12 384 aaKnown RBP16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 SENP2Q9HC62 589 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 DENND2AQ9ULE3 1009 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 CAPN11Q9UMQ6 739 aa16.3■□□□□ 0.2
VPS9D1-201ENST00000389386 MGRN1O60291 552 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 MATR3P43243 847 aaKnown RBP eCLIP16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 IFIT5Q13325 482 aaKnown RBP16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 MEA1Q16626 185 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 FKBP15Q5T1M5 1219 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 GIGYF2Q6Y7W6 1299 aaKnown RBP16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 MICU3Q86XE3 530 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 TATDN2Q93075 761 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 ATP6V1G3Q96LB4 118 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 ECM29Q5VYK3 1845 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 MMP1P03956 469 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 ITGB3BPQ13352 177 aaPredicted RBP16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 TSR1Q2NL82 804 aaKnown RBP16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 CYB5R4Q7L1T6 521 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 NLRP10Q86W26 655 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 ZBTB38Q8NAP3 1195 aaPredicted RBP16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 RASSF8Q8NHQ8 419 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 TRMT112Q9UI30 125 aaKnown RBP16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 RWDD2AQ9UIY3 292 aa16.29■□□□□ 0.2
VPS9D1-201ENST00000389386 MACROD2A1Z1Q3 448 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 EME2A4GXA9 379 aaPredicted RBP16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 PCCAP05165 728 aaPredicted RBP16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 PRLRP16471 622 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 ICA1Q05084 483 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 ACCSLQ4AC99 568 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 GLE1Q53GS7 698 aaKnown RBP16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 HELBQ8NG08 1087 aaPredicted RBP16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 HOOK2Q96ED9 719 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 EPSTI1Q96J88 318 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 ANKRD18BA2A2Z9 1011 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 SNAP23O00161 211 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 ZBTB43O43298 467 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 CLSTN1O94985 981 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 ITGA6P23229 1130 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 GCKP35557 465 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 CYLC1P35663 651 aaPredicted RBP16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 SCTRP47872 440 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 VAV2P52735 878 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 ADCY2Q08462 1091 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 SAFBQ15424 915 aaKnown RBP eCLIP16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 LACTB2Q53H82 288 aaPredicted RBP16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 LDHAL6AQ6ZMR3 332 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 MB21D1Q8N884 522 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 C3orf20Q8ND61 904 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 SLC26A6Q9BXS9 759 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 PPANQ9NQ55 473 aaKnown RBP16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 BATF3Q9NR55 127 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 AATFQ9NY61 560 aaKnown RBP eCLIP16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 KCNJ14Q9UNX9 436 aa16.28■□□□□ 0.2
VPS9D1-201ENST00000389386 HMGB1P1B2RPK0 211 aaPredicted RBP16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 OPLAHO14841 1288 aa16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 FAM153BP0C7A2 387 aa16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 WASHC4Q2M389 1173 aa16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 FAM153CQ494X1 144 aa16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 SEPT12Q8IYM1 358 aa16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 RSRC1Q96IZ7 334 aaKnown RBP16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 FOXP1Q9H334 677 aaPredicted RBP16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 GPR108Q9NPR9 543 aa16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 FAM153AQ9UHL3 310 aa16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 STK36Q9NRP7 1315 aa16.27■□□□□ 0.2
VPS9D1-201ENST00000389386 GMNCA6NCL1 334 aa16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 ZAP70P43403 619 aa16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 SSRP1Q08945 709 aaKnown RBP16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 METTL24Q5JXM2 366 aa16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 RRAGBQ5VZM2 374 aa16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 SMIM5Q71RC9 77 aa16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 DZIP3Q86Y13 1208 aaKnown RBP16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 MREGQ8N565 214 aa16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 KIF9Q9HAQ2 790 aa16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 SPATS2LQ9NUQ6 558 aaKnown RBP16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 CEP131Q9UPN4 1083 aa16.27■□□□□ 0.19
VPS9D1-201ENST00000389386 IRS4O14654 1257 aaPredicted RBP16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 GUCY1A2P33402 732 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 NBPF9Q3BBW0 867 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 CDCA2Q69YH5 1023 aaPredicted RBP16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 TAX1BP1Q86VP1 789 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 TTLL11Q8NHH1 800 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 SH3GL3Q99963 347 aa16.26■□□□□ 0.19
VPS9D1-201ENST00000389386 TRPC5Q9UL62 973 aaPredicted RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms