RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 ATP1A1P05023 1023 aaKnown RBP18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 LDHCP07864 332 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 HERVK_113P62684 666 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 INF2Q27J81 1249 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 MSL1Q68DK7 614 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 FOXR1Q6PIV2 292 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 GPIHBP1Q8IV16 184 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 C4orf32Q8N8J7 132 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 TMEM60Q9H2L4 133 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 CCDC194A0A1B0GVG4 234 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 WDR59Q6PJI9 974 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 EYA3Q99504 573 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 TMEM47Q9BQJ4 181 aa18.24■□□□□ 0.51
NKX3-1-201ENST00000380871 GSTO1P78417 241 aa18.23■□□□□ 0.51
NKX3-1-201ENST00000380871 PFKFB3Q16875 520 aaPredicted RBP18.23■□□□□ 0.51
NKX3-1-201ENST00000380871 WHAMMP3Q1A5X7 153 aa18.23■□□□□ 0.51
NKX3-1-201ENST00000380871 TRIM66O15016 1216 aa18.23■□□□□ 0.51
NKX3-1-201ENST00000380871 BLIDQ8IZY5 108 aa18.23■□□□□ 0.51
NKX3-1-201ENST00000380871 BBXQ8WY36 941 aaPredicted RBP18.23■□□□□ 0.51
NKX3-1-201ENST00000380871 RBM17Q96I25 401 aaKnown RBP18.23■□□□□ 0.51
NKX3-1-201ENST00000380871 MMS19Q96T76 1030 aa18.23■□□□□ 0.51
NKX3-1-201ENST00000380871 RCCD1A6NED2 376 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 ERLIN1O75477 346 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 DDR1Q08345 913 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 SBK1Q52WX2 424 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 MUM1L1Q5H9M0 696 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 GSPT2Q8IYD1 628 aaKnown RBP18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 MB21D1Q8N884 522 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 ANKRD20A12PQ8NF67 263 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 AGPAT5Q9NUQ2 364 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 DUSP10Q9Y6W6 482 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 FRMPD2Q68DX3 1309 aaPredicted RBP18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 B4DLN1 442 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 FGRP09769 529 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 DISC1Q9NRI5 854 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 CDK8P49336 464 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 SPAG1Q07617 926 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 ADSSL1Q8N142 457 aa18.22■□□□□ 0.51
NKX3-1-201ENST00000380871 KLRF2D3W0D1 207 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 POTEB2H3BUK9 544 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 RASA1P20936 1047 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 LACRTQ9GZZ8 138 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 FEZ2Q9UHY8 353 aaPredicted RBP18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 ZNF185O15231 689 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 PCP11498 1178 aaKnown RBP18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 SLC35G1Q2M3R5 365 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 CCDC122Q5T0U0 273 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 TRAPPC11Q7Z392 1133 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 OR8K1Q8NGG5 319 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 TBC1D16Q8TBP0 767 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 TRIM47Q96LD4 638 aa18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 LUC7L2Q9Y383 392 aaKnown RBP18.21■□□□□ 0.51
NKX3-1-201ENST00000380871 LGALS16A8MUM7 142 aa18.2■□□□□ 0.5
NKX3-1-201ENST00000380871 CYTH3O43739 400 aa18.2■□□□□ 0.5
NKX3-1-201ENST00000380871 LRRC47Q8N1G4 583 aaKnown RBP18.2■□□□□ 0.5
NKX3-1-201ENST00000380871 RTFDC1Q9BY42 306 aaPredicted RBP18.2■□□□□ 0.5
NKX3-1-201ENST00000380871 RIN2Q8WYP3 895 aaPredicted RBP18.2■□□□□ 0.5
NKX3-1-201ENST00000380871 PLEKHA4Q9H4M7 779 aa18.2■□□□□ 0.5
NKX3-1-201ENST00000380871 NAPAP54920 295 aa18.2■□□□□ 0.5
NKX3-1-201ENST00000380871 ZNF507Q8TCN5 953 aa18.2■□□□□ 0.5
NKX3-1-201ENST00000380871 KLRC4O43908 158 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 CYP27A1Q02318 531 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 TRIM14Q14142 442 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 HPS3Q969F9 1004 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 RMND1Q9NWS8 449 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 TRPC5Q9UL62 973 aaPredicted RBP18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 A0A1B0GUL6 1792 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 RASSF10A6NK89 507 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 H7C1D1 291 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 ATP2B4P23634 1241 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 ACTN2P35609 894 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 LONP1P36776 959 aaKnown RBP18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 LETM2Q2VYF4 491 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 GOLGA5Q8TBA6 731 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 DNAJC7Q99615 494 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 GPCPD1Q9NPB8 672 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 MYO1AQ9UBC5 1043 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 MKRN1Q9UHC7 482 aaKnown RBP18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 MAD2L2Q9UI95 211 aa18.19■□□□□ 0.5
NKX3-1-201ENST00000380871 MPHOSPH10O00566 681 aaKnown RBP18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 EIF3JO75822 258 aaKnown RBP18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 TRAPPC10P48553 1259 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 TUBB2AQ13885 445 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 DGKHQ86XP1 1220 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 ZNF622Q969S3 477 aaKnown RBP eCLIP18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 CEP95Q96GE4 821 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 TUBB2BQ9BVA1 445 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 TNNT3P45378 269 aaPredicted RBP18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 CACNB3P54284 484 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 C10orf67Q8IYJ2 551 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 PSD3Q9NYI0 1048 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 MACROD2A1Z1Q3 448 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 MYBL2P10244 700 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 IRS2Q9Y4H2 1338 aa18.18■□□□□ 0.5
NKX3-1-201ENST00000380871 FAM196BA6NMK8 535 aa18.17■□□□□ 0.5
NKX3-1-201ENST00000380871 PSMD14O00487 310 aa18.17■□□□□ 0.5
NKX3-1-201ENST00000380871 MRPS25P82663 173 aaKnown RBP18.17■□□□□ 0.5
NKX3-1-201ENST00000380871 DTHD1Q6ZMT9 781 aa18.17■□□□□ 0.5
NKX3-1-201ENST00000380871 ZC3H12CQ9C0D7 883 aaKnown RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms