RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 NCK2O43639 380 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 MOCS3O95396 460 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 SRGNP10124 158 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 KCTD19Q17RG1 926 aaPredicted RBP20.62■□□□□ 0.89
CCDC3-201ENST00000378825 CCDC152Q4G0S7 254 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 NFRKBQ6P4R8 1299 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 BICDL1Q6ZP65 573 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 C3orf67Q6ZVT6 689 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 TADA2BQ86TJ2 420 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 CSGALNACT2Q8N6G5 542 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 MTA3Q9BTC8 594 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 RMND1Q9NWS8 449 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 ANAPC4Q9UJX5 808 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 A0A1W2PQC6 194 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 SHOX2O60902 331 aaPredicted RBP20.62■□□□□ 0.89
CCDC3-201ENST00000378825 KRT83P78385 493 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 GRIN2DO15399 1336 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 NTSR2O95665 410 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 FCER1AP12319 257 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 CCDC96Q2M329 555 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 ANKRD40Q6AI12 368 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 EXOC1Q9NV70 894 aa20.62■□□□□ 0.89
CCDC3-201ENST00000378825 COL1A1P02452 1464 aaPredicted RBP20.61■□□□□ 0.89
CCDC3-201ENST00000378825 ATP2B2Q01814 1243 aa20.61■□□□□ 0.89
CCDC3-201ENST00000378825 CKAP4Q07065 602 aaKnown RBP20.61■□□□□ 0.89
CCDC3-201ENST00000378825 SH2D3CQ8N5H7 860 aa20.61■□□□□ 0.89
CCDC3-201ENST00000378825 BCAS4Q8TDM0 211 aa20.61■□□□□ 0.89
CCDC3-201ENST00000378825 DUOX1Q9NRD9 1551 aa20.61■□□□□ 0.89
CCDC3-201ENST00000378825 CICQ96RK0 1608 aaPredicted RBP20.61■□□□□ 0.89
CCDC3-201ENST00000378825 CYLC1P35663 651 aaPredicted RBP20.61■□□□□ 0.89
CCDC3-201ENST00000378825 STK4Q13043 487 aa20.61■□□□□ 0.89
CCDC3-201ENST00000378825 RBM28Q9NW13 759 aaKnown RBP20.61■□□□□ 0.89
CCDC3-201ENST00000378825 SALL4Q9UJQ4 1053 aa20.61■□□□□ 0.89
CCDC3-201ENST00000378825 EEF1GP26641 437 aaKnown RBP20.6■□□□□ 0.89
CCDC3-201ENST00000378825 DNM2P50570 870 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 GNGT1P63211 74 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 STAG2Q8N3U4 1231 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 DOT1LQ8TEK3 1739 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 SECISBP2LQ93073 1101 aaKnown RBP20.6■□□□□ 0.89
CCDC3-201ENST00000378825 CNOT6LQ96LI5 555 aaKnown RBP20.6■□□□□ 0.89
CCDC3-201ENST00000378825 MAGEC2Q9UBF1 373 aaPredicted RBP20.6■□□□□ 0.89
CCDC3-201ENST00000378825 FAM169AQ9Y6X4 670 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 ZPR1O75312 459 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 PPP2R5BQ15173 497 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 MIIPQ5JXC2 388 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 FBXW10Q5XX13 1052 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 KCTD16Q68DU8 428 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 PURBQ96QR8 312 aaKnown RBP20.6■□□□□ 0.89
CCDC3-201ENST00000378825 FAM184BQ9ULE4 1060 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 SNX12Q9UMY4 172 aa20.6■□□□□ 0.89
CCDC3-201ENST00000378825 PFKFB3Q16875 520 aaPredicted RBP20.59■□□□□ 0.89
CCDC3-201ENST00000378825 INF2Q27J81 1249 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 CCDC178Q5BJE1 867 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 TTMPQ5BVD1 217 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 EFCAB13Q8IY85 973 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 THAP9Q9H5L6 903 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 ARAP2Q8WZ64 1704 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 ZSCAN5CA6NGD5 496 aaPredicted RBP20.59■□□□□ 0.89
CCDC3-201ENST00000378825 PSMA7O14818 248 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 DNA2P51530 1060 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 KIF5AQ12840 1032 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 GIMAP8Q8ND71 665 aaPredicted RBP20.59■□□□□ 0.89
CCDC3-201ENST00000378825 SPATA4Q8NEY3 305 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 CAPS2Q9BXY5 557 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 ARHGAP20Q9P2F6 1191 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 PLCH1Q4KWH8 1693 aa20.59■□□□□ 0.89
CCDC3-201ENST00000378825 SPATA31A1Q5TZJ5 1347 aa20.58■□□□□ 0.89
CCDC3-201ENST00000378825 IPO7O95373 1038 aaKnown RBP20.58■□□□□ 0.89
CCDC3-201ENST00000378825 MCM3P25205 808 aa20.58■□□□□ 0.89
CCDC3-201ENST00000378825 LONP1P36776 959 aaKnown RBP20.58■□□□□ 0.89
CCDC3-201ENST00000378825 MTIF2P46199 727 aaKnown RBP20.58■□□□□ 0.89
CCDC3-201ENST00000378825 CCDC24Q8N4L8 307 aa20.58■□□□□ 0.89
CCDC3-201ENST00000378825 FAM207AQ9NSI2 230 aaPredicted RBP20.58■□□□□ 0.89
CCDC3-201ENST00000378825 ZNHIT6Q9NWK9 470 aaKnown RBP20.58■□□□□ 0.89
CCDC3-201ENST00000378825 LRP5O75197 1615 aa20.58■□□□□ 0.89
CCDC3-201ENST00000378825 COL14A1Q05707 1796 aaKnown RBP20.58■□□□□ 0.88
CCDC3-201ENST00000378825 VAV2P52735 878 aa20.58■□□□□ 0.88
CCDC3-201ENST00000378825 ZBED6P86452 979 aa20.58■□□□□ 0.88
CCDC3-201ENST00000378825 PDCLQ13371 301 aa20.58■□□□□ 0.88
CCDC3-201ENST00000378825 ERFEQ4G0M1 354 aa20.58■□□□□ 0.88
CCDC3-201ENST00000378825 C2CD5Q86YS7 1000 aa20.58■□□□□ 0.88
CCDC3-201ENST00000378825 BLIDQ8IZY5 108 aa20.58■□□□□ 0.88
CCDC3-201ENST00000378825 MS4A14Q96JA4 679 aa20.58■□□□□ 0.88
CCDC3-201ENST00000378825 JAG2Q9Y219 1238 aa20.58■□□□□ 0.88
CCDC3-201ENST00000378825 ESYT3A0FGR9 886 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 ATP1A2P50993 1020 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 CCDC42Q96M95 316 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 NOC4LQ9BVI4 516 aaKnown RBP20.57■□□□□ 0.88
CCDC3-201ENST00000378825 UBA7P41226 1012 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 SLC35G1Q2M3R5 365 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 PARP10Q53GL7 1025 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 DTHD1Q6ZMT9 781 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 TMC4Q7Z404 712 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 ANKRD18AQ8IVF6 992 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 RPGRIP1Q96KN7 1286 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 CPVLQ9H3G5 476 aa20.57■□□□□ 0.88
CCDC3-201ENST00000378825 A0A087WUV0 522 aaPredicted RBP20.56■□□□□ 0.88
CCDC3-201ENST00000378825 DDAH1O94760 285 aa20.56■□□□□ 0.88
CCDC3-201ENST00000378825 RHOBTB3O94955 611 aa20.56■□□□□ 0.88
CCDC3-201ENST00000378825 KRT14P02533 472 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms