RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 STRIP1Q5VSL9 837 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 FAM212AQ96EL1 285 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 IMPG2Q9BZV3 1241 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 MAN1B1Q9UKM7 699 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 IVNS1ABPQ9Y6Y0 642 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 CTAGE15A4D2H0 777 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 COBLO75128 1261 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 CTAGE8P0CG41 777 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 EEF2P13639 858 aaKnown RBP16.14■□□□□ 0.17
TCOF1-202ENST00000377797 CTAGE6Q86UF2 777 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 CCDC84Q86UT8 332 aaPredicted RBP16.14■□□□□ 0.17
TCOF1-202ENST00000377797 CTAGE4Q8IX94 777 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 NUP58Q9BVL2 599 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 FDPSP14324 419 aaKnown RBP16.14■□□□□ 0.17
TCOF1-202ENST00000377797 RESP18Q5W5W9 173 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 CYP26C1Q6V0L0 522 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 GPIHBP1Q8IV16 184 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 FMR1NBQ8N0W7 255 aaPredicted RBP16.14■□□□□ 0.17
TCOF1-202ENST00000377797 MAGEF1Q9HAY2 307 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 NRBP1Q9UHY1 535 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 IKBKBO14920 756 aa16.13■□□□□ 0.17
TCOF1-202ENST00000377797 TMTC1Q8IUR5 882 aa16.13■□□□□ 0.17
TCOF1-202ENST00000377797 IFT74Q96LB3 600 aa16.13■□□□□ 0.17
TCOF1-202ENST00000377797 NOP56O00567 594 aaKnown RBP16.13■□□□□ 0.17
TCOF1-202ENST00000377797 RRP9O43818 475 aaKnown RBP16.13■□□□□ 0.17
TCOF1-202ENST00000377797 MCM3P25205 808 aa16.13■□□□□ 0.17
TCOF1-202ENST00000377797 FAM207AQ9NSI2 230 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-202ENST00000377797 PANK4Q9NVE7 773 aa16.13■□□□□ 0.17
TCOF1-202ENST00000377797 ZBTB5O15062 677 aa16.13■□□□□ 0.17
TCOF1-202ENST00000377797 EXOC3O60645 756 aa16.13■□□□□ 0.17
TCOF1-202ENST00000377797 HARSP12081 509 aaKnown RBP16.13■□□□□ 0.17
TCOF1-202ENST00000377797 LRP10Q7Z4F1 713 aa16.13■□□□□ 0.17
TCOF1-202ENST00000377797 NAA15Q9BXJ9 866 aaKnown RBP16.13■□□□□ 0.17
TCOF1-202ENST00000377797 SMCR8Q8TEV9 937 aaPredicted RBP16.13■□□□□ 0.17
TCOF1-202ENST00000377797 PABPC4Q13310 644 aaKnown RBP eCLIP16.12■□□□□ 0.171e-6■■■■□ 20.9
TCOF1-202ENST00000377797 SUPT20HL1Q3ZLR7 823 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 LRCH2Q5VUJ6 765 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 OSBPL5Q9H0X9 879 aaPredicted RBP16.12■□□□□ 0.17
TCOF1-202ENST00000377797 PNMA2Q9UL42 364 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 PCDHB13Q9Y5F0 798 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 F5H6K3 240 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 KLRC3Q07444 240 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 SLC15A2Q16348 729 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 TBC1D10BQ4KMP7 808 aaPredicted RBP16.12■□□□□ 0.17
TCOF1-202ENST00000377797 KRT26Q7Z3Y9 468 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 ANKRD35Q8N283 1001 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L10C9JJH3 530 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 GNPTABQ3T906 1256 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 RIOK1Q9BRS2 568 aaKnown RBP16.12■□□□□ 0.17
TCOF1-202ENST00000377797 TEKT3Q9BXF9 490 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 ZNF341Q9BYN7 854 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 HPS5Q9UPZ3 1129 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 POTEB2H3BUK9 544 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 HOXA13P31271 388 aaPredicted RBP16.12■□□□□ 0.17
TCOF1-202ENST00000377797 DDIT3P35638 169 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 PAGE5Q96GU1 130 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 BARHL2Q9NY43 387 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 POLLQ9UGP5 575 aa16.12■□□□□ 0.17
TCOF1-202ENST00000377797 CKAP4Q07065 602 aaKnown RBP16.11■□□□□ 0.17
TCOF1-202ENST00000377797 HLTFQ14527 1009 aaKnown RBP eCLIP16.11■□□□□ 0.17
TCOF1-202ENST00000377797 EZH2Q15910 746 aaKnown RBP16.11■□□□□ 0.17
TCOF1-202ENST00000377797 DCAF4Q8WV16 495 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 ANO3Q9BYT9 981 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 PRM3Q9NNZ6 103 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 GPR75-ASB3A0A0A6YYF3 556 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 PLCG1P19174 1290 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 GADL1Q6ZQY3 521 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 CLEC10AQ8IUN9 316 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 LRRC8AQ8IWT6 810 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 USP14P54578 494 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 TAF3Q5VWG9 929 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 ZNF579Q8NAF0 562 aaKnown RBP16.11■□□□□ 0.17
TCOF1-202ENST00000377797 CTNNBL1Q8WYA6 563 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-202ENST00000377797 DNAI2Q9GZS0 605 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.11■□□□□ 0.172e-6■■■■■ 129.4
TCOF1-202ENST00000377797 NALCNQ8IZF0 1738 aa16.11■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L15C9J2P7 530 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L13C9JLJ4 530 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L11C9JVI0 530 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L18D6R9N7 530 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L22D6RA61 530 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L17D6RBQ6 530 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L19D6RCP7 530 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L20D6RJB6 530 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L24Q0WX57 530 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 CDC42EP5Q6NZY7 148 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 USP17L6PQ6QN14 398 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 VGLL2Q8N8G2 317 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 RDH13Q8NBN7 331 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 FNBP1Q96RU3 617 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 NLRC4Q9NPP4 1024 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 MTMR4Q9NYA4 1195 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 MED1Q15648 1581 aaPredicted RBP16.1■□□□□ 0.17
TCOF1-202ENST00000377797 RASA1P20936 1047 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 DNM2P50570 870 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 FAM160B2Q86V87 743 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 COL4A3BPQ9Y5P4 624 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 PPP4CP60510 307 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 BIRC3Q13489 604 aa16.1■□□□□ 0.17
TCOF1-202ENST00000377797 SLF1Q9BQI6 1058 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms