RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 SESTD1Q86VW0 696 aa13.6□□□□□ -0.23
VPS13A-204ENST00000376634 FAM178BQ8IXR5 827 aa13.6□□□□□ -0.23
VPS13A-204ENST00000376634 DIS3L2Q8IYB7 885 aaKnown RBP13.6□□□□□ -0.23
VPS13A-204ENST00000376634 TRIML1Q8N9V2 468 aa13.6□□□□□ -0.23
VPS13A-204ENST00000376634 PRPF38AQ8NAV1 312 aaKnown RBP13.6□□□□□ -0.23
VPS13A-204ENST00000376634 SGK1O00141 431 aa13.6□□□□□ -0.23
VPS13A-204ENST00000376634 RASIP1Q5U651 963 aa13.6□□□□□ -0.23
VPS13A-204ENST00000376634 SYNJ2BP-COX16A0A087WUM0 186 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 MAP3K7CLP57077 242 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 C8orf34Q49A92 452 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 MYOCDQ8IZQ8 938 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 SPDYE1Q8NFV5 336 aaPredicted RBP13.59□□□□□ -0.23
VPS13A-204ENST00000376634 COX16Q9P0S2 106 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 BZW2Q9Y6E2 419 aaKnown RBP13.59□□□□□ -0.23
VPS13A-204ENST00000376634 RCN2Q14257 317 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 NLRC4Q9NPP4 1024 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 CPA1P15085 419 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 EAPPQ56P03 285 aaPredicted RBP13.59□□□□□ -0.23
VPS13A-204ENST00000376634 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS13A-204ENST00000376634 PTPN22Q9Y2R2 807 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 A2MP01023 1474 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 FAM170AA1A519 330 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 IL9RQ01113 521 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 HP1BP3Q5SSJ5 553 aaPredicted RBP13.59□□□□□ -0.23
VPS13A-204ENST00000376634 KRT26Q7Z3Y9 468 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 VPS54Q9P1Q0 977 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 HYOU1Q9Y4L1 999 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 CAPN12Q6ZSI9 719 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 FGD4Q96M96 766 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 FRMD3A2A2Y4 597 aa13.59□□□□□ -0.23
VPS13A-204ENST00000376634 NSFP46459 744 aaKnown RBP13.59□□□□□ -0.23
VPS13A-204ENST00000376634 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.59□□□□□ -0.23
VPS13A-204ENST00000376634 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS13A-204ENST00000376634 ARPP21Q9UBL0 812 aaPredicted RBP13.59□□□□□ -0.23
VPS13A-204ENST00000376634 EYA2O00167 538 aa13.58□□□□□ -0.23
VPS13A-204ENST00000376634 PDE8AO60658 829 aa13.58□□□□□ -0.23
VPS13A-204ENST00000376634 ADKP55263 362 aaKnown RBP13.58□□□□□ -0.23
VPS13A-204ENST00000376634 YWHAGP61981 247 aaKnown RBP eCLIP13.58□□□□□ -0.23
VPS13A-204ENST00000376634 GNGT1P63211 74 aa13.58□□□□□ -0.23
VPS13A-204ENST00000376634 BFSP1Q12934 665 aa13.58□□□□□ -0.23
VPS13A-204ENST00000376634 CACNA1FO60840 1977 aa13.58□□□□□ -0.23
VPS13A-204ENST00000376634 TMEM191BP0C7N4 346 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 STX1BP61266 288 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 RYBPQ8N488 228 aaPredicted RBP13.58□□□□□ -0.24
VPS13A-204ENST00000376634 PSTPIP2Q9H939 334 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 LMTK3Q96Q04 1460 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 MCTP2Q6DN12 878 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 NBPF3Q9H094 633 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 PRDM1O75626 825 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 TMED1Q13445 227 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 KLC3Q6P597 504 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 CDC37L1Q7L3B6 337 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 TRIM42Q8IWZ5 723 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 CHURC1Q8WUH1 139 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 AS3MTQ9HBK9 375 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 KSR1Q8IVT5 923 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 MLXIPQ9HAP2 919 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 ATP8B3O60423 1300 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 RNMTO43148 476 aaKnown RBP13.58□□□□□ -0.24
VPS13A-204ENST00000376634 CENPKQ9BS16 269 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 TTI1O43156 1089 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 EEF1B2P24534 225 aaKnown RBP13.58□□□□□ -0.24
VPS13A-204ENST00000376634 SLC12A1Q13621 1099 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 KLHDC4Q8TBB5 520 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 TTC25Q96NG3 672 aa13.58□□□□□ -0.24
VPS13A-204ENST00000376634 SMCO2A6NFE2 343 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 TLR3O15455 904 aaKnown RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 RDH13Q8NBN7 331 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 MYL10Q9BUA6 226 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 ZNF532Q9HCE3 1301 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 CPP00450 1065 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 RSRC2Q7L4I2 434 aaKnown RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 OR8K1Q8NGG5 319 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 ATP6V1E2Q96A05 226 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 LRRC59Q96AG4 307 aaKnown RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 POLR3AO14802 1390 aaPredicted RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 SOS2Q07890 1332 aaPredicted RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 TRMT44Q8IYL2 757 aaKnown RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 MCF2L2Q86YR7 1114 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 BBS5Q8N3I7 341 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 MCF2LO15068 1137 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 PMLP29590 882 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 FAM160B1Q5W0V3 765 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 ADAT2Q7Z6V5 191 aaKnown RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 LPIN2Q92539 896 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 CDCA7Q9BWT1 371 aaPredicted RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 PNMA2Q9UL42 364 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 EEF1DP29692 281 aaKnown RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 C17orf53Q8N3J3 647 aaPredicted RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 URB1O60287 2271 aaKnown RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 H7C0C1 242 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 ATP5OP48047 213 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 RNASELQ05823 741 aaKnown RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 IFT122Q9HBG6 1241 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 LRRIQ4A6NIV6 560 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 MAN1A2O60476 641 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 EEF1GP26641 437 aaKnown RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 KPNA2P52292 529 aaKnown RBP13.57□□□□□ -0.24
VPS13A-204ENST00000376634 PDE1BQ01064 536 aa13.57□□□□□ -0.24
VPS13A-204ENST00000376634 MFSD14BQ5SR56 506 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms