RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.07□□□□□ -1.44
ATG4A-204ENST00000372246 MKRN1Q9UHC7 482 aaKnown RBP6.07□□□□□ -1.44
ATG4A-204ENST00000372246 SRPRBQ9Y5M8 271 aaKnown RBP6.07□□□□□ -1.44
ATG4A-204ENST00000372246 H0YHG0 523 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 EBAG9O00559 213 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 NDUFAB1O14561 156 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 MYO1BO43795 1136 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 UPP2O95045 317 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 FMNL1O95466 1100 aaPredicted RBP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 PDE6AP16499 860 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 HPDP32754 393 aaPredicted RBP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 ADD2P35612 726 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 MAP2K2P36507 400 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 CABP4P57796 275 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 PIP4K2BP78356 416 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 HDLBPQ00341 1268 aaKnown RBP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 E2F5Q15329 346 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 TTF1Q15361 905 aaPredicted RBP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 RTN1Q16799 776 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 WDR93Q6P2C0 686 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 LCORLQ8N3X6 602 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 SPATA20Q8TB22 786 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 RNPC3Q96LT9 517 aaKnown RBP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 PCMTD1Q96MG8 357 aaPredicted RBP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 SLC24A3Q9HC58 644 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 TTF2Q9UNY4 1162 aaKnown RBP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 LTN1O94822 1766 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 PARP1P09874 1014 aaKnown RBP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 AARSP49588 968 aaKnown RBP eCLIP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 CARSP49589 748 aaKnown RBP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 NBPF9Q3BBW0 867 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 FILIP1LQ4L180 1135 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 LDHAL6AQ6ZMR3 332 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 PIK3AP1Q6ZUJ8 805 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 ADGRA1Q86SQ6 560 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 CNGA4Q8IV77 575 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 CRACR2BQ8N4Y2 399 aaPredicted RBP6.06□□□□□ -1.44
ATG4A-204ENST00000372246 ZIM3Q96PE6 472 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 MED4Q9NPJ6 270 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 SUFUQ9UMX1 484 aa6.06□□□□□ -1.44
ATG4A-204ENST00000372246 EIF3HO15372 352 aaKnown RBP eCLIP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 GLI1P08151 1106 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 IFT88Q13099 833 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 SAFBQ15424 915 aaKnown RBP eCLIP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 PKN1Q16512 942 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 CCDC96Q2M329 555 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 CEP57Q86XR8 500 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 TMTC1Q8IUR5 882 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 IFNL3Q8IZI9 196 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 ANKRD20A12PQ8NF67 263 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 CCDC43Q96MW1 224 aaKnown RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 STRBPQ96SI9 672 aaKnown RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 NAPBQ9H115 298 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 NHEJ1Q9H9Q4 299 aaPredicted RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 PPANQ9NQ55 473 aaKnown RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 FAM207AQ9NSI2 230 aaPredicted RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 RBM12Q9NTZ6 932 aaKnown RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 TSR3Q9UJK0 312 aaKnown RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 NFU1Q9UMS0 254 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 C4AP0C0L4 1744 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 C4BP0C0L5 1744 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 PCNTO95613 3336 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 SLIT1O75093 1534 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 PLEKHG1Q9ULL1 1385 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 TRIM75PA6NK02 468 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 TTC36A6NLP5 189 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 CDKL5O76039 1030 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 RPSAP08865 295 aaKnown RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 ERCC5P28715 1186 aaPredicted RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 PAK1Q13153 545 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 NNTQ13423 1086 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 DDX42Q86XP3 938 aaKnown RBP eCLIP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 CREG2Q8IUH2 290 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 MARCH10Q8NA82 808 aaPredicted RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 BANK1Q8NDB2 785 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 GPKOWQ92917 476 aaPredicted RBP eCLIP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 NLRP3Q96P20 1036 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 CPVLQ9H3G5 476 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 CNNM1Q9NRU3 951 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 DACH1Q9UI36 760 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 JAG2Q9Y219 1238 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 LUC7L2Q9Y383 392 aaKnown RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 SH3BP1Q9Y3L3 701 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 MYO5AQ9Y4I1 1855 aaKnown RBP6.05□□□□□ -1.44
ATG4A-204ENST00000372246 MEGF6O75095 1541 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 MST1RQ04912 1400 aa6.05□□□□□ -1.44
ATG4A-204ENST00000372246 RFX7Q2KHR2 1363 aa6.04□□□□□ -1.44
ATG4A-204ENST00000372246 SOS2Q07890 1332 aaPredicted RBP6.04□□□□□ -1.44
ATG4A-204ENST00000372246 GSG1L2A8MUP6 293 aa6.04□□□□□ -1.44
ATG4A-204ENST00000372246 DCDC2CA8MYV0 355 aa6.04□□□□□ -1.44
ATG4A-204ENST00000372246 PSMD14O00487 310 aa6.04□□□□□ -1.44
ATG4A-204ENST00000372246 PPP1R12BO60237 982 aaPredicted RBP6.04□□□□□ -1.44
ATG4A-204ENST00000372246 SHOX2O60902 331 aaPredicted RBP6.04□□□□□ -1.44
ATG4A-204ENST00000372246 FTCDO95954 541 aa6.04□□□□□ -1.44
ATG4A-204ENST00000372246 FCER1AP12319 257 aa6.04□□□□□ -1.44
ATG4A-204ENST00000372246 IFNAR1P17181 557 aa6.04□□□□□ -1.44
ATG4A-204ENST00000372246 TRIM21P19474 475 aaKnown RBP6.04□□□□□ -1.44
ATG4A-204ENST00000372246 ITGA6P23229 1130 aa6.04□□□□□ -1.44
ATG4A-204ENST00000372246 PAX7P23759 505 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms