RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 FAM25GB3EWG6 89 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 CYLC2Q14093 348 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-207ENST00000367255 DNAL1Q4LDG9 190 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 TNPO1Q92973 898 aaKnown RBP4.11□□□□□ -1.75
SYNE1-207ENST00000367255 USP28Q96RU2 1077 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 CSGALNACT2Q8N6G5 542 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 VPS50Q96JG6 964 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 NUF2Q9BZD4 464 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 MSL3P1P0C860 447 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 SH3TC2Q8TF17 1288 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 MRRFQ96E11 262 aaKnown RBP4.11□□□□□ -1.75
SYNE1-207ENST00000367255 CEP63Q96MT8 703 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 TBCCD1Q9NVR7 557 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 SCINQ9Y6U3 715 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 ZNF839A8K0R7 811 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 SULT1C3Q6IMI6 304 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 IFIH1Q9BYX4 1025 aaKnown RBP4.11□□□□□ -1.75
SYNE1-207ENST00000367255 SNRKQ9NRH2 765 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 MIER3Q7Z3K6 550 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 PDCD6IPQ8WUM4 868 aaKnown RBP4.11□□□□□ -1.75
SYNE1-207ENST00000367255 INPP5DQ92835 1189 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 VAT1LQ9HCJ6 419 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 NLRP2Q9NX02 1062 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 ARL2BPQ9Y2Y0 163 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 AP1G2O75843 785 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 ANKRD20A4Q4UJ75 823 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 ANKRD20A2Q5SQ80 823 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 ANKRD20A1Q5TYW2 823 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 ME1P48163 572 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 FAM47EQ6ZV65 393 aa4.11□□□□□ -1.75
SYNE1-207ENST00000367255 APOBEC2Q9Y235 224 aaKnown RBP4.11□□□□□ -1.75
SYNE1-207ENST00000367255 CBFA2T3O75081 653 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 DNAJB7Q7Z6W7 309 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CNKSR2Q8WXI2 1034 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 SGSM3Q96HU1 749 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 LRRC37BQ96QE4 947 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TRIM62Q9BVG3 475 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TRPM2O94759 1503 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 BRCC3P46736 316 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CFAP70Q5T0N1 1121 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 SPTY2D1Q68D10 685 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 EPB41P11171 864 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TARSP26639 723 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TNIP2Q8NFZ5 429 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 HELBQ8NG08 1087 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ACBD5Q5T8D3 534 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 IRGQQ8WZA9 623 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 L2HGDHQ9H9P8 463 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 SYBUQ9NX95 663 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 MED14O60244 1454 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CUL3Q13618 768 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CENPUQ71F23 418 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 OTUD7AQ8TE49 926 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TMEM87BQ96K49 555 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 WWC3Q9ULE0 1092 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 S100A1P23297 94 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ZNF662Q6ZS27 426 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ARHGEF18Q6ZSZ5 1173 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 FSIP1Q8NA03 581 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ZNF398Q8TD17 642 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CETN3O15182 167 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 HSPA2P54652 639 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 HDAC4P56524 1084 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 COPZ1P61923 177 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 BYSLQ13895 437 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 GSTA3Q16772 222 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TSGA10IPQ3SY00 556 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 KLC3Q6P597 504 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 PLA2G4DQ86XP0 818 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CAAP1Q9H8G2 361 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TMEM45AQ9NWC5 275 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 FCGR1AP12314 374 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 DNAJB4Q9UDY4 337 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 PODXLO00592 558 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ITGA9Q13797 1035 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 FAM81AQ8TBF8 368 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 N4BP2L2Q92802 583 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TRIM33Q9UPN9 1127 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TOM1L1O75674 476 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 USP14P54578 494 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 E2F4Q16254 413 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 SH2D3CQ8N5H7 860 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 DHTKD1Q96HY7 919 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 PHACTR3Q96KR7 559 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 DAB2IPQ5VWQ8 1189 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TUBA3EQ6PEY2 450 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ZHX3Q9H4I2 956 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 LIMA1Q9UHB6 759 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 SURF6O75683 361 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 PDE1BQ01064 536 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 PNPT1Q8TCS8 783 aaKnown RBP4.1□□□□□ -1.75
SYNE1-207ENST00000367255 ATP8B4Q8TF62 1192 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 RSPH1Q8WYR4 309 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CLSTN2Q9H4D0 955 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 GIN1Q9NXP7 522 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CDC23Q9UJX2 597 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 CCPG1Q9ULG6 757 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 TRPC6Q9Y210 931 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 A2ML1A8K2U0 1454 aa4.1□□□□□ -1.75
SYNE1-207ENST00000367255 KRT28Q7Z3Y7 464 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms