RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 HNRNPUQ00839 825 aaKnown RBP eCLIP16.5■□□□□ 0.23
VPS29-201ENST00000360579 CNTN2Q02246 1040 aa16.5■□□□□ 0.23
VPS29-201ENST00000360579 TKFCQ3LXA3 575 aa16.5■□□□□ 0.23
VPS29-201ENST00000360579 PPP2R2DQ66LE6 453 aa16.5■□□□□ 0.23
VPS29-201ENST00000360579 STK11IPQ8N1F8 1099 aa16.5■□□□□ 0.23
VPS29-201ENST00000360579 CEP95Q96GE4 821 aa16.5■□□□□ 0.23
VPS29-201ENST00000360579 NOC4LQ9BVI4 516 aaKnown RBP16.5■□□□□ 0.23
VPS29-201ENST00000360579 C1QTNF1Q9BXJ1 281 aa16.5■□□□□ 0.23
VPS29-201ENST00000360579 ZBTB40Q9NUA8 1239 aa16.5■□□□□ 0.23
VPS29-201ENST00000360579 YBX2Q9Y2T7 364 aaKnown RBP16.5■□□□□ 0.23
VPS29-201ENST00000360579 Q9Y3F1 56 aa16.5■□□□□ 0.23
VPS29-201ENST00000360579 PCDHA11Q9Y5I1 949 aa16.5■□□□□ 0.23
VPS29-201ENST00000360579 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.49■□□□□ 0.23
VPS29-201ENST00000360579 PFKMP08237 780 aa16.49■□□□□ 0.23
VPS29-201ENST00000360579 TDO2P48775 406 aa16.49■□□□□ 0.23
VPS29-201ENST00000360579 FXR2P51116 673 aaKnown RBP eCLIP16.49■□□□□ 0.23
VPS29-201ENST00000360579 STAT2P52630 851 aa16.49■□□□□ 0.23
VPS29-201ENST00000360579 CCL23P55773 120 aa16.49■□□□□ 0.23
VPS29-201ENST00000360579 SLFN13Q68D06 897 aa16.49■□□□□ 0.23
VPS29-201ENST00000360579 FAM160B2Q86V87 743 aa16.49■□□□□ 0.23
VPS29-201ENST00000360579 CHURC1Q8WUH1 139 aa16.49■□□□□ 0.23
VPS29-201ENST00000360579 FAM122AQ96E09 287 aa16.49■□□□□ 0.23
VPS29-201ENST00000360579 LRRCC1Q9C099 1032 aa16.49■□□□□ 0.23
VPS29-201ENST00000360579 A1CFQ9NQ94 594 aaKnown RBP16.49■□□□□ 0.23
VPS29-201ENST00000360579 RNF146Q9NTX7 359 aa16.49■□□□□ 0.23
VPS29-201ENST00000360579 ASTN1O14525 1302 aa16.48■□□□□ 0.23
VPS29-201ENST00000360579 TMEM232C9JQI7 657 aa16.48■□□□□ 0.23
VPS29-201ENST00000360579 DYNC1LI2O43237 492 aaPredicted RBP16.48■□□□□ 0.23
VPS29-201ENST00000360579 SUPT20HL2P0C7V6 817 aa16.48■□□□□ 0.23
VPS29-201ENST00000360579 PPP4R3BQ5MIZ7 849 aa16.48■□□□□ 0.23
VPS29-201ENST00000360579 IQSEC1Q6DN90 963 aa16.48■□□□□ 0.23
VPS29-201ENST00000360579 LRRC47Q8N1G4 583 aaKnown RBP16.48■□□□□ 0.23
VPS29-201ENST00000360579 SPDYE1Q8NFV5 336 aaPredicted RBP16.48■□□□□ 0.23
VPS29-201ENST00000360579 APPBP2Q92624 585 aa16.48■□□□□ 0.23
VPS29-201ENST00000360579 ISY1Q9ULR0 285 aaKnown RBP16.48■□□□□ 0.23
VPS29-201ENST00000360579 MYO9BQ13459 2157 aa16.48■□□□□ 0.23
VPS29-201ENST00000360579 PLIN4Q96Q06 1357 aa16.48■□□□□ 0.23
VPS29-201ENST00000360579 UMODL1Q5DID0 1318 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 SOWAHBA6NEL2 793 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 ZBBXA8MT70 800 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 B4GALT4O60513 344 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 PRDM1O75626 825 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 ZFYP08048 801 aaPredicted RBP16.47■□□□□ 0.23
VPS29-201ENST00000360579 SLC3A2P08195 630 aaKnown RBP16.47■□□□□ 0.23
VPS29-201ENST00000360579 TSPY3P0CV98 308 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 TSPY8P0CW00 308 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 ATP2A2P16615 1042 aaKnown RBP16.47■□□□□ 0.23
VPS29-201ENST00000360579 SMPD1P17405 629 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 PDE4BQ07343 736 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 IKQ13123 557 aaPredicted RBP16.47■□□□□ 0.23
VPS29-201ENST00000360579 MICALL1Q8N3F8 863 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 KBTBD3Q8NAB2 608 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 NEDD1Q8NHV4 660 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 STAG1Q8WVM7 1258 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 GMCL1Q96IK5 515 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 TRERF1Q96PN7 1200 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 TRPV6Q9H1D0 765 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 WNT8AQ9H1J5 351 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 ECHDC1Q9NTX5 307 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 RAPGEFL1Q9UHV5 662 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 MYH7P12883 1935 aa16.47■□□□□ 0.23
VPS29-201ENST00000360579 GRIN2DO15399 1336 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 GPAA1O43292 621 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 GTPBP6O43824 516 aaPredicted RBP16.46■□□□□ 0.23
VPS29-201ENST00000360579 PLA2G6O60733 806 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 APPP05067 770 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 BMP1P13497 986 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 SLC1A4P43007 532 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 RABGGTBP53611 331 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 LRRFIP1Q32MZ4 808 aaKnown RBP16.46■□□□□ 0.23
VPS29-201ENST00000360579 OSBP2Q969R2 916 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 AGBL1Q96MI9 1066 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 NACAP1Q9BZK3 213 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 VTA1Q9NP79 307 aa16.46■□□□□ 0.23
VPS29-201ENST00000360579 ERC2O15083 957 aa16.45■□□□□ 0.22
VPS29-201ENST00000360579 RNF113AO15541 343 aaKnown RBP16.45■□□□□ 0.22
VPS29-201ENST00000360579 ACTN1P12814 892 aa16.45■□□□□ 0.22
VPS29-201ENST00000360579 ALAS1P13196 640 aa16.45■□□□□ 0.22
VPS29-201ENST00000360579 POU3F3P20264 500 aaPredicted RBP16.45■□□□□ 0.22
VPS29-201ENST00000360579 SKIV2LQ15477 1246 aaKnown RBP16.45■□□□□ 0.22
VPS29-201ENST00000360579 TMEM67Q5HYA8 995 aa16.45■□□□□ 0.22
VPS29-201ENST00000360579 GPATCH3Q96I76 525 aa16.45■□□□□ 0.22
VPS29-201ENST00000360579 ALDH8A1Q9H2A2 487 aaPredicted RBP16.45■□□□□ 0.22
VPS29-201ENST00000360579 EPB41L4AQ9HCS5 686 aaPredicted RBP16.45■□□□□ 0.22
VPS29-201ENST00000360579 POLR3EQ9NVU0 708 aa16.45■□□□□ 0.22
VPS29-201ENST00000360579 MCM3APO60318 1980 aa16.45■□□□□ 0.22
VPS29-201ENST00000360579 ZNF536O15090 1300 aa16.45■□□□□ 0.22
VPS29-201ENST00000360579 TRANK1O15050 2925 aa16.44■□□□□ 0.22
VPS29-201ENST00000360579 PATL2C9JE40 543 aaKnown RBP16.44■□□□□ 0.22
VPS29-201ENST00000360579 PSMC6P62333 389 aa16.44■□□□□ 0.22
VPS29-201ENST00000360579 TAPT1Q6NXT6 567 aa16.44■□□□□ 0.22
VPS29-201ENST00000360579 FBXO16Q8IX29 292 aaPredicted RBP16.44■□□□□ 0.22
VPS29-201ENST00000360579 SCLYQ96I15 445 aa16.44■□□□□ 0.22
VPS29-201ENST00000360579 CYP39A1Q9NYL5 469 aa16.44■□□□□ 0.22
VPS29-201ENST00000360579 COG5Q9UP83 839 aa16.44■□□□□ 0.22
VPS29-201ENST00000360579 MYH4Q9Y623 1939 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 LOC102724159A0A0B4J2E5 919 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 MYOGP15173 224 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 RFC2P35250 354 aa16.43■□□□□ 0.22
VPS29-201ENST00000360579 TFAP4Q01664 338 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms