RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 R3HDMLQ9H3Y0 253 aa21.86■■□□□ 1.09
CHMP4A-201ENST00000347519 WDR33Q9C0J8 1336 aaKnown RBP21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 ESYT2A0FGR8 921 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 BTBD18B2RXH4 712 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 ATP2A1O14983 1001 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 ALAS1P13196 640 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 OAZ1P54368 228 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 NUCB2P80303 420 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 NR5A1Q13285 461 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 Q3C1V9 767 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 MUM1L1Q5H9M0 696 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 SNRNP48Q6IEG0 339 aaKnown RBP21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 DIS3L2Q8IYB7 885 aaKnown RBP21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 RGS22Q8NE09 1264 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 CCDC148Q8NFR7 591 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 RASGRP4Q8TDF6 673 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 CLEC4DQ8WXI8 215 aa21.85■■□□□ 1.09
CHMP4A-201ENST00000347519 ABCB11O95342 1321 aa21.84■■□□□ 1.09
CHMP4A-201ENST00000347519 F13A1P00488 732 aa21.84■■□□□ 1.09
CHMP4A-201ENST00000347519 VEGFBP49765 207 aa21.84■■□□□ 1.09
CHMP4A-201ENST00000347519 INHBEP58166 350 aa21.84■■□□□ 1.09
CHMP4A-201ENST00000347519 NOGQ13253 232 aa21.84■■□□□ 1.09
CHMP4A-201ENST00000347519 PLS1Q14651 629 aa21.84■■□□□ 1.09
CHMP4A-201ENST00000347519 MCTP1Q6DN14 999 aa21.84■■□□□ 1.09
CHMP4A-201ENST00000347519 MB21D1Q8N884 522 aa21.84■■□□□ 1.09
CHMP4A-201ENST00000347519 CHAMP1Q96JM3 812 aa21.84■■□□□ 1.09
CHMP4A-201ENST00000347519 PCDHA4Q9UN74 947 aa21.84■■□□□ 1.09
CHMP4A-201ENST00000347519 ADGRA2Q96PE1 1338 aa21.83■■□□□ 1.09
CHMP4A-201ENST00000347519 RBBP6Q7Z6E9 1792 aaKnown RBP21.83■■□□□ 1.09
CHMP4A-201ENST00000347519 MYH15Q9Y2K3 1946 aa21.83■■□□□ 1.09
CHMP4A-201ENST00000347519 M0R2N6 131 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 KRT2P35908 639 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 STAT3P40763 770 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 ADCY7P51828 1080 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 SREBF2Q12772 1141 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 UBE2SQ16763 222 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 EARS2Q5JPH6 523 aaKnown RBP21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 BLIDQ8IZY5 108 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 DAGLBQ8NCG7 672 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 CCDC12Q8WUD4 166 aaPredicted RBP21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 TNFRSF25Q93038 417 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 TEX13BQ9BXU2 312 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 RIC8AQ9NPQ8 531 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 HOMER2Q9NSB8 354 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 TMEM260Q9NX78 707 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 RABGAP1Q9Y3P9 1069 aa21.83■■□□□ 1.08
CHMP4A-201ENST00000347519 FAM205CA6NFA0 338 aa21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 NFIBO00712 420 aa21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 CALML3P27482 149 aa21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 FAM173BQ6P4H8 233 aa21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 FAM177A1Q8N128 213 aaPredicted RBP21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 SMCR8Q8TEV9 937 aaPredicted RBP21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 TRERF1Q96PN7 1200 aa21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 PARK7Q99497 189 aaKnown RBP21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 SPATC1LQ9H0A9 340 aa21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 C6orf50Q9HD87 102 aa21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 ZCCHC17Q9NP64 241 aaKnown RBP21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 RNF146Q9NTX7 359 aa21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 PCDHA6Q9UN73 950 aa21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 MRPL11Q9Y3B7 192 aaKnown RBP21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 PCDHA8Q9Y5H6 950 aa21.82■■□□□ 1.08
CHMP4A-201ENST00000347519 TAF1CQ15572 869 aaPredicted RBP21.81■■□□□ 1.08
CHMP4A-201ENST00000347519 USP17L6PQ6QN14 398 aa21.81■■□□□ 1.08
CHMP4A-201ENST00000347519 RIOX2Q8IUF8 465 aa21.81■■□□□ 1.08
CHMP4A-201ENST00000347519 MOV10L1Q9BXT6 1211 aaKnown RBP21.81■■□□□ 1.08
CHMP4A-201ENST00000347519 PSTPIP2Q9H939 334 aa21.81■■□□□ 1.08
CHMP4A-201ENST00000347519 BIN2Q9UBW5 565 aaPredicted RBP21.81■■□□□ 1.08
CHMP4A-201ENST00000347519 MEIS2O14770 477 aa21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 U2AF2P26368 475 aaKnown RBP eCLIP21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 CLK2P49760 499 aaKnown RBP21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 ERVK-9P63128 1117 aa21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 ERVK-24P63145 666 aa21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 SAFBQ15424 915 aaKnown RBP eCLIP21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 FOXD4L6Q3SYB3 417 aaPredicted RBP21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 JAKMIP3Q5VZ66 844 aa21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 GALNT17Q6IS24 598 aa21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 FOXD4L3Q6VB84 417 aaPredicted RBP21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 ANKRD13CQ8N6S4 541 aa21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 CUL5Q93034 780 aa21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 FOXP1Q9H334 677 aaPredicted RBP21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 THSD7BQ9C0I4 1608 aa21.8■■□□□ 1.08
CHMP4A-201ENST00000347519 PDIA4P13667 645 aaKnown RBP21.79■■□□□ 1.08
CHMP4A-201ENST00000347519 GNA11P29992 359 aa21.79■■□□□ 1.08
CHMP4A-201ENST00000347519 HOXA13P31271 388 aaPredicted RBP21.79■■□□□ 1.08
CHMP4A-201ENST00000347519 GCLCP48506 637 aaPredicted RBP21.79■■□□□ 1.08
CHMP4A-201ENST00000347519 TRAF1Q13077 416 aa21.79■■□□□ 1.08
CHMP4A-201ENST00000347519 GTF3C2Q8WUA4 911 aaPredicted RBP21.79■■□□□ 1.08
CHMP4A-201ENST00000347519 PGBD1Q96JS3 809 aa21.79■■□□□ 1.08
CHMP4A-201ENST00000347519 MORF4L1Q9UBU8 362 aa21.79■■□□□ 1.08
CHMP4A-201ENST00000347519 CPA4Q9UI42 421 aa21.79■■□□□ 1.08
CHMP4A-201ENST00000347519 LCTP09848 1927 aa21.78■■□□□ 1.08
CHMP4A-201ENST00000347519 MRPL12P52815 198 aaKnown RBP21.78■■□□□ 1.08
CHMP4A-201ENST00000347519 COL13A1Q5TAT6 717 aaPredicted RBP21.78■■□□□ 1.08
CHMP4A-201ENST00000347519 TNPO1Q92973 898 aaKnown RBP21.78■■□□□ 1.08
CHMP4A-201ENST00000347519 PNMA2Q9UL42 364 aa21.78■■□□□ 1.08
CHMP4A-201ENST00000347519 TCHHQ07283 1943 aa21.78■■□□□ 1.08
CHMP4A-201ENST00000347519 CFBP00751 764 aa21.77■■□□□ 1.08
CHMP4A-201ENST00000347519 BCRP11274 1271 aa21.77■■□□□ 1.08
CHMP4A-201ENST00000347519 CRHR2Q13324 411 aa21.77■■□□□ 1.08
CHMP4A-201ENST00000347519 TKFCQ3LXA3 575 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms