RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 CASQ1P31415 396 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 SCNN1DP51172 638 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 ERVK-24P63145 666 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 SPAG1Q07617 926 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 DOK7Q18PE1 504 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 SOGA3Q5TF21 947 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 CNGA4Q8IV77 575 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 REXO1Q8N1G1 1221 aaKnown RBP17.37■□□□□ 0.37
UPF3B-202ENST00000345865 AK8Q96MA6 479 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 QTRT2Q9H974 415 aaKnown RBP17.37■□□□□ 0.37
UPF3B-202ENST00000345865 LZTFL1Q9NQ48 299 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 OGFRQ9NZT2 677 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 TTF2Q9UNY4 1162 aaKnown RBP17.37■□□□□ 0.37
UPF3B-202ENST00000345865 BRWD3Q6RI45 1802 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 TADA3O75528 432 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 ABL1P00519 1130 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 PRKCSHP14314 528 aaPredicted RBP17.37■□□□□ 0.37
UPF3B-202ENST00000345865 TRIM9Q9C026 710 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 ABHD10Q9NUJ1 306 aa17.37■□□□□ 0.37
UPF3B-202ENST00000345865 ESYT2A0FGR8 921 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 MYL1P05976 194 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 SRGNP10124 158 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 ARHGAP29Q52LW3 1261 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 TTI2Q6NXR4 508 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 EEF2KMTQ96G04 330 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 GPCPD1Q9NPB8 672 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 UBXN1Q04323 297 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 SMAP1Q8IYB5 467 aaPredicted RBP17.36■□□□□ 0.37
UPF3B-202ENST00000345865 MTMR9Q96QG7 549 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 DUSP9Q99956 384 aaKnown RBP17.36■□□□□ 0.37
UPF3B-202ENST00000345865 SRRTQ9BXP5 876 aaKnown RBP17.36■□□□□ 0.37
UPF3B-202ENST00000345865 MRFAP1Q9Y605 127 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 QSER1Q2KHR3 1735 aa17.36■□□□□ 0.37
UPF3B-202ENST00000345865 SLC37A4O43826 429 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 PPP1R11O60927 126 aaPredicted RBP17.35■□□□□ 0.37
UPF3B-202ENST00000345865 SHMT1P34896 483 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 STK4Q13043 487 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 ACRBPQ8NEB7 543 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 CCDC51Q96ER9 411 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 ZC3H12CQ9C0D7 883 aaKnown RBP17.35■□□□□ 0.37
UPF3B-202ENST00000345865 USP40Q9NVE5 1235 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 FCER1AP12319 257 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 ZSCAN20P17040 1043 aaPredicted RBP17.35■□□□□ 0.37
UPF3B-202ENST00000345865 TXKP42681 527 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 ASPRV1Q53RT3 343 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 TTBK2Q6IQ55 1244 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 TMC4Q7Z404 712 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 ZNF507Q8TCN5 953 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 NUP88Q99567 741 aaPredicted RBP17.35■□□□□ 0.37
UPF3B-202ENST00000345865 EPC1Q9H2F5 836 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 CUEDC2Q9H467 287 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 SERPINB13Q9UIV8 391 aa17.35■□□□□ 0.37
UPF3B-202ENST00000345865 TDP2O95551 362 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 CLCN6P51797 869 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 NFIAQ12857 509 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 CDC42EP5Q6NZY7 148 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 KRT27Q7Z3Y8 459 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 MNS1Q8NEH6 495 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 HPS3Q969F9 1004 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 C7orf25Q9BPX7 421 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 JMJD4Q9H9V9 463 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 KCNQ5Q9NR82 932 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 SUGT1Q9Y2Z0 365 aa17.34■□□□□ 0.37
UPF3B-202ENST00000345865 NKRFO15226 690 aaKnown RBP eCLIP17.33■□□□□ 0.37
UPF3B-202ENST00000345865 KRT9P35527 623 aa17.33■□□□□ 0.37
UPF3B-202ENST00000345865 APOBEC3HQ6NTF7 200 aaKnown RBP17.33■□□□□ 0.37
UPF3B-202ENST00000345865 ZFPM1Q8IX07 1006 aa17.33■□□□□ 0.37
UPF3B-202ENST00000345865 MB21D1Q8N884 522 aa17.33■□□□□ 0.37
UPF3B-202ENST00000345865 ANKRD20A12PQ8NF67 263 aa17.33■□□□□ 0.37
UPF3B-202ENST00000345865 UBXN4Q92575 508 aa17.33■□□□□ 0.37
UPF3B-202ENST00000345865 TRIM47Q96LD4 638 aa17.33■□□□□ 0.37
UPF3B-202ENST00000345865 TTC26A0AVF1 554 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 LGALS16A8MUM7 142 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 EFCAB8A8MWE9 144 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 PSMA7O14818 248 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 TTLL1O95922 423 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 PDE4DQ08499 809 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 ZNF543Q08ER8 600 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 GRB10Q13322 594 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 ADGRF4Q8IZF3 695 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 CHP1Q99653 195 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 THAP9Q9H5L6 903 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 MAGEF1Q9HAY2 307 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 BLOC1S4Q9NUP1 217 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 FAM53CQ9NYF3 392 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 PCDHAC2Q9Y5I4 1007 aa17.33■□□□□ 0.36
UPF3B-202ENST00000345865 ADCY7P51828 1080 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 ASIC1P78348 528 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 ANKRD40Q6AI12 368 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 COL23A1Q86Y22 540 aaPredicted RBP17.32■□□□□ 0.36
UPF3B-202ENST00000345865 PNMA5Q96PV4 448 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 ZMYND15Q9H091 742 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 MYH4Q9Y623 1939 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 TPM1P09493 284 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 EEF1GP26641 437 aaKnown RBP17.32■□□□□ 0.36
UPF3B-202ENST00000345865 SLC16A2P36021 539 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 UBE2SQ16763 222 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 TMTC1Q8IUR5 882 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 KIAA0895Q8NCT3 520 aa17.32■□□□□ 0.36
UPF3B-202ENST00000345865 DHTKD1Q96HY7 919 aaPredicted RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms