RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 CAP2P40123 477 aa14.52□□□□□ -0.08
CLK3-201ENST00000345005 ADCY7P51828 1080 aa14.52□□□□□ -0.08
CLK3-201ENST00000345005 NONOQ15233 471 aaKnown RBP eCLIP14.52□□□□□ -0.085e-7■■□□□ 13.6
CLK3-201ENST00000345005 PTPN14Q15678 1187 aa14.52□□□□□ -0.08
CLK3-201ENST00000345005 ZRSR1Q15695 479 aaKnown RBP14.52□□□□□ -0.08
CLK3-201ENST00000345005 MIGA2Q7L4E1 593 aa14.52□□□□□ -0.08
CLK3-201ENST00000345005 REXO1Q8N1G1 1221 aaKnown RBP14.52□□□□□ -0.08
CLK3-201ENST00000345005 TSC1Q92574 1164 aa14.52□□□□□ -0.08
CLK3-201ENST00000345005 COA7Q96BR5 231 aa14.52□□□□□ -0.08
CLK3-201ENST00000345005 CSRNP2Q9H175 543 aa14.52□□□□□ -0.08
CLK3-201ENST00000345005 ZBTB21Q9ULJ3 1066 aa14.52□□□□□ -0.08
CLK3-201ENST00000345005 WNT7AO00755 349 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 BMP3P12645 472 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 LMNB1P20700 586 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 KCNJ6P48051 423 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 GRIN1Q05586 938 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 IQCB1Q15051 598 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 INF2Q27J81 1249 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 SAMD7Q7Z3H4 446 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 CEP57L1Q8IYX8 460 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 C16orf45Q96MC5 204 aaPredicted RBP14.52□□□□□ -0.09
CLK3-201ENST00000345005 GLT8D2Q9H1C3 349 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 DNAJC25Q9H1X3 360 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 SH2D4AQ9H788 454 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 GOPCQ9HD26 462 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 RIC8AQ9NPQ8 531 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 TMX2Q9Y320 296 aa14.52□□□□□ -0.09
CLK3-201ENST00000345005 LAD1O00515 517 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 CCP110O43303 1012 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 MRPL12P52815 198 aaKnown RBP14.51□□□□□ -0.09
CLK3-201ENST00000345005 TPM4P67936 248 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 KIF4BQ2VIQ3 1234 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 TBC1D10BQ4KMP7 808 aaPredicted RBP14.51□□□□□ -0.09
CLK3-201ENST00000345005 SPECC1Q5M775 1068 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 KANK3Q6NY19 840 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 KRBA2Q6ZNG9 492 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 ZNF397Q8NF99 534 aaPredicted RBP14.51□□□□□ -0.09
CLK3-201ENST00000345005 KIF18AQ8NI77 898 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 ERO1AQ96HE7 468 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 ARID3AQ99856 593 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 DDX41Q9UJV9 622 aaKnown RBP14.51□□□□□ -0.09
CLK3-201ENST00000345005 ZNF541Q9H0D2 1346 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 MYH7BA7E2Y1 1941 aa14.51□□□□□ -0.09
CLK3-201ENST00000345005 A0A1W2PRG0 241 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 EGFRP00533 1210 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 ASNSP08243 561 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 ORC2Q13416 577 aaPredicted RBP14.5□□□□□ -0.09
CLK3-201ENST00000345005 LONRF3Q496Y0 759 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 BTNL9Q6UXG8 535 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 CDAN1Q8IWY9 1227 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 C4orf32Q8N8J7 132 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 CNNM3Q8NE01 707 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 CACTINQ8WUQ7 758 aaKnown RBP14.5□□□□□ -0.09
CLK3-201ENST00000345005 CCDC34Q96HJ3 373 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 BPIFA3Q9BQP9 254 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 PRDM10Q9NQV6 1147 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 GINM1Q9NU53 330 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 BIN2Q9UBW5 565 aaPredicted RBP14.5□□□□□ -0.09
CLK3-201ENST00000345005 VWA3AA6NCI4 1184 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 TMEM232C9JQI7 657 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 POLR2DO15514 142 aaKnown RBP14.5□□□□□ -0.09
CLK3-201ENST00000345005 PPP1R11O60927 126 aaPredicted RBP14.5□□□□□ -0.09
CLK3-201ENST00000345005 QRICH1Q2TAL8 776 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 SYDE2Q5VT97 1194 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 NEK8Q86SG6 692 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 CUL5Q93034 780 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 TEPSINQ96N21 525 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 HACL1Q9UJ83 578 aa14.5□□□□□ -0.09
CLK3-201ENST00000345005 POLR2AP24928 1970 aaKnown RBP14.5□□□□□ -0.09
CLK3-201ENST00000345005 LONP1P36776 959 aaKnown RBP14.49□□□□□ -0.09
CLK3-201ENST00000345005 LRMPQ12912 555 aa14.49□□□□□ -0.09
CLK3-201ENST00000345005 IKQ13123 557 aaPredicted RBP14.49□□□□□ -0.09
CLK3-201ENST00000345005 CDC37Q16543 378 aaPredicted RBP14.49□□□□□ -0.09
CLK3-201ENST00000345005 JAKMIP3Q5VZ66 844 aa14.49□□□□□ -0.09
CLK3-201ENST00000345005 NYAP1Q6ZVC0 841 aa14.49□□□□□ -0.09
CLK3-201ENST00000345005 GPC2Q8N158 579 aa14.49□□□□□ -0.09
CLK3-201ENST00000345005 HOOK2Q96ED9 719 aa14.49□□□□□ -0.09
CLK3-201ENST00000345005 PYM1Q9BRP8 204 aaKnown RBP14.49□□□□□ -0.09
CLK3-201ENST00000345005 PSTPIP2Q9H939 334 aa14.49□□□□□ -0.09
CLK3-201ENST00000345005 PHF20L1A8MW92 1017 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 SKILP12757 684 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 PRPHP41219 470 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 ECE1P42892 770 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 TRAF1Q13077 416 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 DTHD1Q6ZMT9 781 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 CCDC150Q8NCX0 1101 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 ACER1Q8TDN7 264 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 SYMPKQ92797 1274 aaKnown RBP14.48□□□□□ -0.09
CLK3-201ENST00000345005 NUP88Q99567 741 aaPredicted RBP14.48□□□□□ -0.09
CLK3-201ENST00000345005 DEFB129Q9H1M3 183 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 GPRC5DQ9NZD1 345 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 NRBP1Q9UHY1 535 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 TUBE1Q9UJT0 475 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.48□□□□□ -0.09
CLK3-201ENST00000345005 STAT2P52630 851 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 NLRP12P59046 1061 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 USP49Q70CQ1 688 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 FBXO11Q86XK2 927 aa14.48□□□□□ -0.09
CLK3-201ENST00000345005 APOBEC3FQ8IUX4 373 aaKnown RBP14.48□□□□□ -0.09
CLK3-201ENST00000345005 KRT222Q8N1A0 295 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms