RNA–Protein interactions for RNA: ENST00000344824.10

TPM4-202, Transcript of tropomyosin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TPM4, Length 1,417 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-202ENST00000344824 PARP1P09874 1014 aaKnown RBP16.05■□□□□ 0.16
TPM4-202ENST00000344824 SNHG28P0DPA3 235 aa16.05■□□□□ 0.16
TPM4-202ENST00000344824 AK2P54819 239 aa16.05■□□□□ 0.16
TPM4-202ENST00000344824 ANTXR2P58335 489 aa16.05■□□□□ 0.16
TPM4-202ENST00000344824 WTAPQ15007 396 aa16.05■□□□□ 0.16
TPM4-202ENST00000344824 NSMFQ6X4W1 530 aa16.05■□□□□ 0.16
TPM4-202ENST00000344824 Q6ZUG5 572 aa16.05■□□□□ 0.16
TPM4-202ENST00000344824 DIS3LQ8TF46 1054 aaKnown RBP16.05■□□□□ 0.16
TPM4-202ENST00000344824 RANBP17Q9H2T7 1088 aaKnown RBP16.05■□□□□ 0.16
TPM4-202ENST00000344824 CYBAP13498 195 aa16.04■□□□□ 0.16
TPM4-202ENST00000344824 ZNF792Q3KQV3 632 aa16.04■□□□□ 0.16
TPM4-202ENST00000344824 TKFCQ3LXA3 575 aa16.04■□□□□ 0.16
TPM4-202ENST00000344824 USH1GQ495M9 461 aa16.04■□□□□ 0.16
TPM4-202ENST00000344824 MUM1L1Q5H9M0 696 aa16.04■□□□□ 0.16
TPM4-202ENST00000344824 PRAMEF19Q5SWL8 479 aa16.04■□□□□ 0.16
TPM4-202ENST00000344824 BTNL9Q6UXG8 535 aa16.04■□□□□ 0.16
TPM4-202ENST00000344824 TRPV1Q8NER1 839 aa16.04■□□□□ 0.16
TPM4-202ENST00000344824 TINF2Q9BSI4 451 aa16.04■□□□□ 0.16
TPM4-202ENST00000344824 GPHNQ9NQX3 736 aaPredicted RBP16.04■□□□□ 0.16
TPM4-202ENST00000344824 DDX20Q9UHI6 824 aaKnown RBP16.04■□□□□ 0.16
TPM4-202ENST00000344824 POTEB2H3BUK9 544 aa16.03■□□□□ 0.16
TPM4-202ENST00000344824 ICAM1P05362 532 aa16.03■□□□□ 0.16
TPM4-202ENST00000344824 EXOSC10Q01780 885 aaKnown RBP16.03■□□□□ 0.16
TPM4-202ENST00000344824 BECN1Q14457 450 aa16.03■□□□□ 0.16
TPM4-202ENST00000344824 SEC23AQ15436 765 aa16.03■□□□□ 0.16
TPM4-202ENST00000344824 CDC37Q16543 378 aaPredicted RBP16.03■□□□□ 0.16
TPM4-202ENST00000344824 ASPRV1Q53RT3 343 aa16.03■□□□□ 0.16
TPM4-202ENST00000344824 TMEM67Q5HYA8 995 aa16.03■□□□□ 0.16
TPM4-202ENST00000344824 DPF3Q92784 378 aa16.03■□□□□ 0.16
TPM4-202ENST00000344824 PAWRQ96IZ0 340 aaKnown RBP16.03■□□□□ 0.16
TPM4-202ENST00000344824 CRISPLD2Q9H0B8 497 aa16.03■□□□□ 0.16
TPM4-202ENST00000344824 A1CFQ9NQ94 594 aaKnown RBP16.03■□□□□ 0.16
TPM4-202ENST00000344824 TOB2Q14106 344 aaPredicted RBP16.02■□□□□ 0.16
TPM4-202ENST00000344824 ANKS1AQ92625 1134 aa16.02■□□□□ 0.16
TPM4-202ENST00000344824 BRF1Q92994 677 aa16.02■□□□□ 0.16
TPM4-202ENST00000344824 SNX21Q969T3 373 aa16.02■□□□□ 0.16
TPM4-202ENST00000344824 HTATIP2Q9BUP3 242 aa16.02■□□□□ 0.16
TPM4-202ENST00000344824 SENP2Q9HC62 589 aa16.02■□□□□ 0.16
TPM4-202ENST00000344824 VAT1LQ9HCJ6 419 aa16.02■□□□□ 0.16
TPM4-202ENST00000344824 ZHX1Q9UKY1 873 aaPredicted RBP16.02■□□□□ 0.16
TPM4-202ENST00000344824 NAP1L2Q9ULW6 460 aaPredicted RBP16.02■□□□□ 0.16
TPM4-202ENST00000344824 CNPY2Q9Y2B0 182 aa16.02■□□□□ 0.16
TPM4-202ENST00000344824 PTPDC1A2A3K4 754 aa16.02■□□□□ 0.15
TPM4-202ENST00000344824 CNTN2Q02246 1040 aa16.02■□□□□ 0.15
TPM4-202ENST00000344824 NECAB2Q7Z6G3 386 aa16.02■□□□□ 0.15
TPM4-202ENST00000344824 ADGRF4Q8IZF3 695 aa16.02■□□□□ 0.15
TPM4-202ENST00000344824 NUP133Q8WUM0 1156 aa16.02■□□□□ 0.15
TPM4-202ENST00000344824 OGDHLQ9ULD0 1010 aa16.02■□□□□ 0.15
TPM4-202ENST00000344824 DIS3Q9Y2L1 958 aaKnown RBP16.02■□□□□ 0.15
TPM4-202ENST00000344824 PFASO15067 1338 aa16.01■□□□□ 0.15
TPM4-202ENST00000344824 MSCO60682 206 aa16.01■□□□□ 0.15
TPM4-202ENST00000344824 APOBRQ0VD83 1088 aa16.01■□□□□ 0.15
TPM4-202ENST00000344824 ANKRD1Q15327 319 aa16.01■□□□□ 0.15
TPM4-202ENST00000344824 NFXL1Q6ZNB6 911 aa16.01■□□□□ 0.15
TPM4-202ENST00000344824 STAG2Q8N3U4 1231 aa16.01■□□□□ 0.15
TPM4-202ENST00000344824 ANKLE1Q8NAG6 615 aa16.01■□□□□ 0.15
TPM4-202ENST00000344824 MYL10Q9BUA6 226 aa16.01■□□□□ 0.15
TPM4-202ENST00000344824 DAXXQ9UER7 740 aaPredicted RBP16.01■□□□□ 0.15
TPM4-202ENST00000344824 WDR19Q8NEZ3 1342 aa16.01■□□□□ 0.15
TPM4-202ENST00000344824 DNAJC25-GNG10A0A024R161 153 aa16■□□□□ 0.15
TPM4-202ENST00000344824 K7ELQ4 463 aaPredicted RBP16■□□□□ 0.15
TPM4-202ENST00000344824 NFIBO00712 420 aa16■□□□□ 0.15
TPM4-202ENST00000344824 SH2B2O14492 632 aaPredicted RBP16■□□□□ 0.15
TPM4-202ENST00000344824 SEPT4O43236 478 aa16■□□□□ 0.15
TPM4-202ENST00000344824 LHX8Q68G74 356 aa16■□□□□ 0.15
TPM4-202ENST00000344824 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16■□□□□ 0.153e-7■□□□□ 8.7
TPM4-202ENST00000344824 ARMCX2Q7L311 632 aa16■□□□□ 0.15
TPM4-202ENST00000344824 CATIPQ7Z7H3 387 aa16■□□□□ 0.15
TPM4-202ENST00000344824 HOMER1Q86YM7 354 aa16■□□□□ 0.15
TPM4-202ENST00000344824 RAB11FIP4Q86YS3 637 aa16■□□□□ 0.15
TPM4-202ENST00000344824 SPRYD3Q8NCJ5 442 aa16■□□□□ 0.15
TPM4-202ENST00000344824 LENG1Q96BZ8 264 aaPredicted RBP16■□□□□ 0.15
TPM4-202ENST00000344824 TMEM87BQ96K49 555 aa16■□□□□ 0.15
TPM4-202ENST00000344824 C11orf49Q9H6J7 331 aa16■□□□□ 0.15
TPM4-202ENST00000344824 CCDC69A6NI79 296 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 KLRF2D3W0D1 207 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 LARGE1O95461 756 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 CALML3P27482 149 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 MCM2P49736 904 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 STK3Q13188 491 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 GRM4Q14833 912 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 QRICH1Q2TAL8 776 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 PRPF38BQ5VTL8 546 aaKnown RBP15.99■□□□□ 0.15
TPM4-202ENST00000344824 SLC30A10Q6XR72 485 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 UBE2Q1Q7Z7E8 422 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 IGDCC4Q8TDY8 1250 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 ALDH8A1Q9H2A2 487 aaPredicted RBP15.99■□□□□ 0.15
TPM4-202ENST00000344824 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.99■□□□□ 0.15
TPM4-202ENST00000344824 CYP39A1Q9NYL5 469 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 MAD2L2Q9UI95 211 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 LIMCH1Q9UPQ0 1083 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 DDX49Q9Y6V7 483 aaKnown RBP15.99■□□□□ 0.15
TPM4-202ENST00000344824 SYNGAP1Q96PV0 1343 aa15.99■□□□□ 0.15
TPM4-202ENST00000344824 KLF18A0A0U1RQI7 1052 aa15.98■□□□□ 0.15
TPM4-202ENST00000344824 IGHA2P01877 340 aa15.98■□□□□ 0.15
TPM4-202ENST00000344824 RARBP10826 455 aa15.98■□□□□ 0.15
TPM4-202ENST00000344824 AKR1A1P14550 325 aa15.98■□□□□ 0.15
TPM4-202ENST00000344824 CAPN2P17655 700 aa15.98■□□□□ 0.15
TPM4-202ENST00000344824 GJC2Q5T442 439 aaPredicted RBP15.98■□□□□ 0.15
TPM4-202ENST00000344824 CCDC144CPQ8IYA2 1237 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms