RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ZNF772Q68DY9 489 aaPredicted RBP21.77■■□□□ 1.08
COL9A3-201ENST00000343916 CARD6Q9BX69 1037 aa21.77■■□□□ 1.08
COL9A3-201ENST00000343916 USP40Q9NVE5 1235 aa21.77■■□□□ 1.08
COL9A3-201ENST00000343916 ADGRG1Q9Y653 693 aa21.77■■□□□ 1.08
COL9A3-201ENST00000343916 MYH8P13535 1937 aa21.77■■□□□ 1.07
COL9A3-201ENST00000343916 SRGNP10124 158 aa21.77■■□□□ 1.07
COL9A3-201ENST00000343916 SPAG1Q07617 926 aa21.77■■□□□ 1.07
COL9A3-201ENST00000343916 KCNB1Q14721 858 aa21.77■■□□□ 1.07
COL9A3-201ENST00000343916 CNGA4Q8IV77 575 aa21.77■■□□□ 1.07
COL9A3-201ENST00000343916 NUP88Q99567 741 aaPredicted RBP21.77■■□□□ 1.07
COL9A3-201ENST00000343916 LRRC37AA6NMS7 1700 aa21.76■■□□□ 1.07
COL9A3-201ENST00000343916 ITIH6Q6UXX5 1313 aa21.76■■□□□ 1.07
COL9A3-201ENST00000343916 RHOBTB3O94955 611 aa21.76■■□□□ 1.07
COL9A3-201ENST00000343916 SMARCA1P28370 1054 aa21.76■■□□□ 1.07
COL9A3-201ENST00000343916 TXKP42681 527 aa21.76■■□□□ 1.07
COL9A3-201ENST00000343916 UBXN1Q04323 297 aa21.76■■□□□ 1.07
COL9A3-201ENST00000343916 ANKRD20A12PQ8NF67 263 aa21.76■■□□□ 1.07
COL9A3-201ENST00000343916 SERPINB13Q9UIV8 391 aa21.76■■□□□ 1.07
COL9A3-201ENST00000343916 FOCADQ5VW36 1801 aa21.76■■□□□ 1.07
COL9A3-201ENST00000343916 H7C1D1 291 aa21.75■■□□□ 1.07
COL9A3-201ENST00000343916 KIFC2Q96AC6 838 aa21.75■■□□□ 1.07
COL9A3-201ENST00000343916 AK8Q96MA6 479 aa21.75■■□□□ 1.07
COL9A3-201ENST00000343916 MMTAG2Q9BU76 263 aaKnown RBP21.75■■□□□ 1.07
COL9A3-201ENST00000343916 NAA15Q9BXJ9 866 aaKnown RBP21.75■■□□□ 1.07
COL9A3-201ENST00000343916 ANKRD31Q8N7Z5 1873 aa21.75■■□□□ 1.07
COL9A3-201ENST00000343916 PES1O00541 588 aaKnown RBP21.75■■□□□ 1.07
COL9A3-201ENST00000343916 ARHGAP29Q52LW3 1261 aa21.75■■□□□ 1.07
COL9A3-201ENST00000343916 GIMAP8Q8ND71 665 aaPredicted RBP21.75■■□□□ 1.07
COL9A3-201ENST00000343916 MNS1Q8NEH6 495 aa21.75■■□□□ 1.07
COL9A3-201ENST00000343916 SRRTQ9BXP5 876 aaKnown RBP21.75■■□□□ 1.07
COL9A3-201ENST00000343916 TRIM9Q9C026 710 aa21.75■■□□□ 1.07
COL9A3-201ENST00000343916 KCNQ5Q9NR82 932 aa21.75■■□□□ 1.07
COL9A3-201ENST00000343916 DDX41Q9UJV9 622 aaKnown RBP21.75■■□□□ 1.07
COL9A3-201ENST00000343916 PLIN4Q96Q06 1357 aa21.75■■□□□ 1.07
COL9A3-201ENST00000343916 ATP2B2Q01814 1243 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 NFIAQ12857 509 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 TTBK2Q6IQ55 1244 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 TRIM47Q96LD4 638 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 ABHD10Q9NUJ1 306 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 ADAMTSL1Q8N6G6 1762 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 SLC37A4O43826 429 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 TDP2O95551 362 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 ERVK-24P63145 666 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 CDC42EP5Q6NZY7 148 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 TMC4Q7Z404 712 aa21.74■■□□□ 1.07
COL9A3-201ENST00000343916 IGKV6D-41A0A0C4DH26 115 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 MPHOSPH10O00566 681 aaKnown RBP21.73■■□□□ 1.07
COL9A3-201ENST00000343916 PSMA7O14818 248 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 EDIL3O43854 480 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 TTLL1O95922 423 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 MYL1P05976 194 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 TPM1P09493 284 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 FCER1AP12319 257 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 SHMT1P34896 483 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 SLC16A2P36021 539 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 PDE4DQ08499 809 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 STK4Q13043 487 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 ASPRV1Q53RT3 343 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 ACRBPQ8NEB7 543 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 HPS3Q969F9 1004 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 ESYT2A0FGR8 921 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 SNHG28P0DPA3 235 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 ASIC1P78348 528 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 COL23A1Q86Y22 540 aaPredicted RBP21.73■■□□□ 1.07
COL9A3-201ENST00000343916 PCDHAC2Q9Y5I4 1007 aa21.73■■□□□ 1.07
COL9A3-201ENST00000343916 KIF20AO95235 890 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 ABL1P00519 1130 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 ADCY7P51828 1080 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 STIM1Q13586 685 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 TTI2Q6NXR4 508 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 ZFPM1Q8IX07 1006 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 ADGRF4Q8IZF3 695 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 UBXN4Q92575 508 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 DBNDD1Q9H9R9 158 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 JMJD4Q9H9V9 463 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 G3V3G9 751 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 PPP1R11O60927 126 aaPredicted RBP21.72■■□□□ 1.07
COL9A3-201ENST00000343916 KRT9P35527 623 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 CACNB3P54284 484 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 CALCRLQ16602 461 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 UBE2SQ16763 222 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 DCAF8Q5TAQ9 597 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 APOBEC3HQ6NTF7 200 aaKnown RBP21.72■■□□□ 1.07
COL9A3-201ENST00000343916 SUGT1Q9Y2Z0 365 aa21.72■■□□□ 1.07
COL9A3-201ENST00000343916 TADA3O75528 432 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 MAP3K9P80192 1104 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 ZNF543Q08ER8 600 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 KCTD1Q719H9 257 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 EPC1Q9H2F5 836 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 CUEDC2Q9H467 287 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 EXOC1Q9NV70 894 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 ZNF446Q9NWS9 450 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 POTEMA6NI47 508 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 FAM196BA6NMK8 535 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 NPR1P16066 1061 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 SHROOM1Q2M3G4 852 aaPredicted RBP21.71■■□□□ 1.07
COL9A3-201ENST00000343916 CCDC51Q96ER9 411 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 MTMR9Q96QG7 549 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 MRFAP1Q9Y605 127 aa21.71■■□□□ 1.07
COL9A3-201ENST00000343916 RAD21O60216 631 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms