RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ASTN1O14525 1302 aa18.46■□□□□ 0.55
CLN3-201ENST00000333496 PFASO15067 1338 aa18.46■□□□□ 0.55
CLN3-201ENST00000333496 SOWAHBA6NEL2 793 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 POTEB2H3BUK9 544 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 SH2B2O14492 632 aaPredicted RBP18.45■□□□□ 0.54
CLN3-201ENST00000333496 SEPT4O43236 478 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 ZNF865P0CJ78 1059 aaPredicted RBP18.45■□□□□ 0.54
CLN3-201ENST00000333496 ANO1Q5XXA6 986 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 NSMFQ6X4W1 530 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 TMEM87BQ96K49 555 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 PURBQ96QR8 312 aaKnown RBP18.45■□□□□ 0.54
CLN3-201ENST00000333496 LRRC2Q9BYS8 371 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 VAT1LQ9HCJ6 419 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 LRRC37A2A6NM11 1700 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 SYNGAP1Q96PV0 1343 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 MSCO60682 206 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 QRICH1Q2TAL8 776 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 USH1GQ495M9 461 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 KCNB2Q92953 911 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 MTMR8Q96EF0 704 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 NEK1Q96PY6 1258 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 NRBP1Q9UHY1 535 aa18.45■□□□□ 0.54
CLN3-201ENST00000333496 LIFRP42702 1097 aa18.44■□□□□ 0.54
CLN3-201ENST00000333496 BAATQ14032 418 aaPredicted RBP18.44■□□□□ 0.54
CLN3-201ENST00000333496 CATIPQ7Z7H3 387 aa18.44■□□□□ 0.54
CLN3-201ENST00000333496 ZNF654Q8IZM8 581 aa18.44■□□□□ 0.54
CLN3-201ENST00000333496 MYL10Q9BUA6 226 aa18.44■□□□□ 0.54
CLN3-201ENST00000333496 PNMA2Q9UL42 364 aa18.44■□□□□ 0.54
CLN3-201ENST00000333496 CYTH3O43739 400 aa18.43■□□□□ 0.54
CLN3-201ENST00000333496 DHX16O60231 1041 aaKnown RBP18.43■□□□□ 0.54
CLN3-201ENST00000333496 HSPA4P34932 840 aa18.43■□□□□ 0.54
CLN3-201ENST00000333496 EXOSC10Q01780 885 aaKnown RBP18.43■□□□□ 0.54
CLN3-201ENST00000333496 ARMCX2Q7L311 632 aa18.43■□□□□ 0.54
CLN3-201ENST00000333496 NECAB2Q7Z6G3 386 aa18.43■□□□□ 0.54
CLN3-201ENST00000333496 CCDC144CPQ8IYA2 1237 aa18.43■□□□□ 0.54
CLN3-201ENST00000333496 DDX49Q9Y6V7 483 aaKnown RBP18.43■□□□□ 0.54
CLN3-201ENST00000333496 TMTC2Q8N394 836 aa18.42■□□□□ 0.54
CLN3-201ENST00000333496 NUP133Q8WUM0 1156 aa18.42■□□□□ 0.54
CLN3-201ENST00000333496 TCEANC2Q96MN5 208 aa18.42■□□□□ 0.54
CLN3-201ENST00000333496 KATNBL1Q9H079 304 aa18.42■□□□□ 0.54
CLN3-201ENST00000333496 RIOX1Q9H6W3 641 aa18.42■□□□□ 0.54
CLN3-201ENST00000333496 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.42■□□□□ 0.54
CLN3-201ENST00000333496 CNPY2Q9Y2B0 182 aa18.42■□□□□ 0.54
CLN3-201ENST00000333496 PPP1R11O60927 126 aaPredicted RBP18.41■□□□□ 0.54
CLN3-201ENST00000333496 REC8O95072 547 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 SLC30A10Q6XR72 485 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 TBC1D5Q92609 795 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 MAP3K14Q99558 947 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 SNX14Q9Y5W7 946 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 PTPDC1A2A3K4 754 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 DDAH1O94760 285 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 COL6A1P12109 1028 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 RPS6P62753 249 aaKnown RBP18.41■□□□□ 0.54
CLN3-201ENST00000333496 ACVR2BQ13705 512 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 KRT32Q14532 448 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 RNF207Q6ZRF8 634 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 DHX32Q7L7V1 743 aaKnown RBP18.41■□□□□ 0.54
CLN3-201ENST00000333496 FBXO11Q86XK2 927 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 ABHD16BQ9H3Z7 469 aa18.41■□□□□ 0.54
CLN3-201ENST00000333496 ABCB11O95342 1321 aa18.4■□□□□ 0.54
CLN3-201ENST00000333496 CCDC69A6NI79 296 aa18.4■□□□□ 0.54
CLN3-201ENST00000333496 ZBTB5O15062 677 aa18.4■□□□□ 0.54
CLN3-201ENST00000333496 ADCY6O43306 1168 aa18.4■□□□□ 0.54
CLN3-201ENST00000333496 AKR1A1P14550 325 aa18.4■□□□□ 0.54
CLN3-201ENST00000333496 RXRAP19793 462 aa18.4■□□□□ 0.54
CLN3-201ENST00000333496 NFXL1Q6ZNB6 911 aa18.4■□□□□ 0.54
CLN3-201ENST00000333496 SGMS1Q86VZ5 419 aa18.4■□□□□ 0.54
CLN3-201ENST00000333496 LENG1Q96BZ8 264 aaPredicted RBP18.4■□□□□ 0.54
CLN3-201ENST00000333496 PIGSQ96S52 555 aa18.4■□□□□ 0.54
CLN3-201ENST00000333496 ZHX1Q9UKY1 873 aaPredicted RBP18.4■□□□□ 0.54
CLN3-201ENST00000333496 ASB14A6NK59 587 aa18.39■□□□□ 0.53
CLN3-201ENST00000333496 CPA1P15085 419 aa18.39■□□□□ 0.53
CLN3-201ENST00000333496 CALML3P27482 149 aa18.39■□□□□ 0.53
CLN3-201ENST00000333496 ALDH5A1P51649 535 aaPredicted RBP18.39■□□□□ 0.53
CLN3-201ENST00000333496 GJC2Q5T442 439 aaPredicted RBP18.39■□□□□ 0.53
CLN3-201ENST00000333496 RGS22Q8NE09 1264 aa18.39■□□□□ 0.53
CLN3-201ENST00000333496 MORC4Q8TE76 937 aa18.39■□□□□ 0.53
CLN3-201ENST00000333496 HTATIP2Q9BUP3 242 aa18.39■□□□□ 0.53
CLN3-201ENST00000333496 AMNQ9BXJ7 453 aa18.39■□□□□ 0.53
CLN3-201ENST00000333496 USP26Q9BXU7 913 aa18.39■□□□□ 0.53
CLN3-201ENST00000333496 C11orf49Q9H6J7 331 aa18.39■□□□□ 0.53
CLN3-201ENST00000333496 OPLAHO14841 1288 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 EPB41L2O43491 1005 aaKnown RBP18.38■□□□□ 0.53
CLN3-201ENST00000333496 CCDC144BQ3MJ40 725 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 HOMER1Q86YM7 354 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 RAB11FIP4Q86YS3 637 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 CTCFLQ8NI51 663 aaPredicted RBP18.38■□□□□ 0.53
CLN3-201ENST00000333496 DPF3Q92784 378 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 KIAA1217Q5T5P2 1943 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 DNM1LO00429 736 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 PLEKHA8P1O95397 391 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 RARBP10826 455 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 LRRC41Q15345 812 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 PRPF38BQ5VTL8 546 aaKnown RBP18.38■□□□□ 0.53
CLN3-201ENST00000333496 JAKMIP1Q96N16 626 aaKnown RBP18.38■□□□□ 0.53
CLN3-201ENST00000333496 ADD3Q9UEY8 706 aaKnown RBP18.38■□□□□ 0.53
CLN3-201ENST00000333496 FAM184BQ9ULE4 1060 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 MRPL11Q9Y3B7 192 aaKnown RBP18.38■□□□□ 0.53
CLN3-201ENST00000333496 SLC12A7Q9Y666 1083 aa18.38■□□□□ 0.53
CLN3-201ENST00000333496 PGK1P00558 417 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms