RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 POTEB2H3BUK9 544 aa16.3■□□□□ 0.2
LIMS1-201ENST00000332345 IGHA2P01877 340 aa16.3■□□□□ 0.2
LIMS1-201ENST00000332345 GNAQP50148 359 aa16.3■□□□□ 0.2
LIMS1-201ENST00000332345 FGD1P98174 961 aa16.3■□□□□ 0.2
LIMS1-201ENST00000332345 TRAF1Q13077 416 aa16.3■□□□□ 0.2
LIMS1-201ENST00000332345 CDC37Q16543 378 aaPredicted RBP16.3■□□□□ 0.2
LIMS1-201ENST00000332345 MUM1L1Q5H9M0 696 aa16.3■□□□□ 0.2
LIMS1-201ENST00000332345 BLOC1S2Q6QNY1 142 aa16.3■□□□□ 0.2
LIMS1-201ENST00000332345 ZNF467Q7Z7K2 595 aaPredicted RBP16.3■□□□□ 0.2
LIMS1-201ENST00000332345 JAKMIP1Q96N16 626 aaKnown RBP16.3■□□□□ 0.2
LIMS1-201ENST00000332345 LZTS2Q9BRK4 669 aa16.3■□□□□ 0.2
LIMS1-201ENST00000332345 TINF2Q9BSI4 451 aa16.3■□□□□ 0.2
LIMS1-201ENST00000332345 SMARCA1P28370 1054 aa16.29■□□□□ 0.2
LIMS1-201ENST00000332345 CNGA1P29973 690 aa16.29■□□□□ 0.2
LIMS1-201ENST00000332345 COL9A3Q14050 684 aaPredicted RBP16.29■□□□□ 0.2
LIMS1-201ENST00000332345 NSMFQ6X4W1 530 aa16.29■□□□□ 0.2
LIMS1-201ENST00000332345 SGMS1Q86VZ5 419 aa16.29■□□□□ 0.2
LIMS1-201ENST00000332345 FBXO11Q86XK2 927 aa16.29■□□□□ 0.2
LIMS1-201ENST00000332345 MAF1Q9H063 256 aa16.29■□□□□ 0.2
LIMS1-201ENST00000332345 RIOX1Q9H6W3 641 aa16.29■□□□□ 0.2
LIMS1-201ENST00000332345 A1CFQ9NQ94 594 aaKnown RBP16.29■□□□□ 0.2
LIMS1-201ENST00000332345 CYP39A1Q9NYL5 469 aa16.29■□□□□ 0.2
LIMS1-201ENST00000332345 NRBP1Q9UHY1 535 aa16.29■□□□□ 0.2
LIMS1-201ENST00000332345 BAZ2BQ9UIF8 2168 aaKnown RBP16.28■□□□□ 0.2
LIMS1-201ENST00000332345 ABCB11O95342 1321 aa16.28■□□□□ 0.2
LIMS1-201ENST00000332345 MSCO60682 206 aa16.28■□□□□ 0.2
LIMS1-201ENST00000332345 MYCNP04198 464 aaPredicted RBP16.28■□□□□ 0.2
LIMS1-201ENST00000332345 CCND3P30281 292 aaPredicted RBP16.28■□□□□ 0.2
LIMS1-201ENST00000332345 QRICH1Q2TAL8 776 aa16.28■□□□□ 0.2
LIMS1-201ENST00000332345 USH1GQ495M9 461 aa16.28■□□□□ 0.2
LIMS1-201ENST00000332345 MAMDC4Q6UXC1 1216 aa16.28■□□□□ 0.2
LIMS1-201ENST00000332345 RGS22Q8NE09 1264 aa16.28■□□□□ 0.2
LIMS1-201ENST00000332345 MTMR8Q96EF0 704 aa16.28■□□□□ 0.2
LIMS1-201ENST00000332345 AMNQ9BXJ7 453 aa16.28■□□□□ 0.2
LIMS1-201ENST00000332345 CRISPLD2Q9H0B8 497 aa16.28■□□□□ 0.2
LIMS1-201ENST00000332345 CNPY2Q9Y2B0 182 aa16.28■□□□□ 0.2
LIMS1-201ENST00000332345 MRPL11Q9Y3B7 192 aaKnown RBP16.28■□□□□ 0.2
LIMS1-201ENST00000332345 SYNGAP1Q96PV0 1343 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 PTPDC1A2A3K4 754 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 ASB14A6NK59 587 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 ZBTB5O15062 677 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 CNTN2Q02246 1040 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 MCF2L2Q86YR7 1114 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 FAM133AQ8N9E0 248 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 FANCBQ8NB91 859 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 CLEC4DQ8WXI8 215 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 TCEANC2Q96MN5 208 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 MYL10Q9BUA6 226 aa16.27■□□□□ 0.2
LIMS1-201ENST00000332345 PNMA6FA0A0J9YX94 578 aa16.26■□□□□ 0.19
LIMS1-201ENST00000332345 NFIBO00712 420 aa16.26■□□□□ 0.19
LIMS1-201ENST00000332345 CYBAP13498 195 aa16.26■□□□□ 0.19
LIMS1-201ENST00000332345 CASTP20810 708 aaKnown RBP16.26■□□□□ 0.19
LIMS1-201ENST00000332345 RPS6KB1P23443 525 aa16.26■□□□□ 0.19
LIMS1-201ENST00000332345 BAATQ14032 418 aaPredicted RBP16.26■□□□□ 0.19
LIMS1-201ENST00000332345 PRAMEF19Q5SWL8 479 aa16.26■□□□□ 0.19
LIMS1-201ENST00000332345 RNF207Q6ZRF8 634 aa16.26■□□□□ 0.19
LIMS1-201ENST00000332345 TRPV1Q8NER1 839 aa16.26■□□□□ 0.19
LIMS1-201ENST00000332345 TM6SF1Q9BZW5 370 aa16.26■□□□□ 0.19
LIMS1-201ENST00000332345 ADD3Q9UEY8 706 aaKnown RBP16.26■□□□□ 0.19
LIMS1-201ENST00000332345 DDX20Q9UHI6 824 aaKnown RBP16.26■□□□□ 0.19
LIMS1-201ENST00000332345 SEPT4O43236 478 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 ZBTB43O43298 467 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 CYTH3O43739 400 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 CPA1P15085 419 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 TAL1P17542 331 aaPredicted RBP16.25■□□□□ 0.19
LIMS1-201ENST00000332345 LHX8Q68G74 356 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 APOA5Q6Q788 366 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 Q6ZUG5 572 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 RUFY3Q7L099 469 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 HOMER1Q86YM7 354 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 FBXL16Q8N461 479 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 ANKLE1Q8NAG6 615 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 SHISA4Q96DD7 197 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 RRP36Q96EU6 259 aaKnown RBP16.25■□□□□ 0.19
LIMS1-201ENST00000332345 PIGSQ96S52 555 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 SPZ1Q9BXG8 430 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 ABHD16BQ9H3Z7 469 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 ZSWIM6Q9HCJ5 1215 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 RBM28Q9NW13 759 aaKnown RBP16.25■□□□□ 0.19
LIMS1-201ENST00000332345 OGDHLQ9ULD0 1010 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 PCDHA1Q9Y5I3 950 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 CYP46A1Q9Y6A2 500 aa16.25■□□□□ 0.19
LIMS1-201ENST00000332345 LOC102724159A0A0B4J2E5 919 aa16.24■□□□□ 0.19
LIMS1-201ENST00000332345 SOWAHBA6NEL2 793 aa16.24■□□□□ 0.19
LIMS1-201ENST00000332345 B4DLN1 442 aa16.24■□□□□ 0.19
LIMS1-201ENST00000332345 SNAI1O95863 264 aaPredicted RBP16.24■□□□□ 0.19
LIMS1-201ENST00000332345 RXRAP19793 462 aa16.24■□□□□ 0.19
LIMS1-201ENST00000332345 CALML3P27482 149 aa16.24■□□□□ 0.19
LIMS1-201ENST00000332345 MRPL12P52815 198 aaKnown RBP16.24■□□□□ 0.19
LIMS1-201ENST00000332345 RPS6P62753 249 aaKnown RBP16.24■□□□□ 0.19
LIMS1-201ENST00000332345 PPP2R5BQ15173 497 aa16.24■□□□□ 0.19
LIMS1-201ENST00000332345 PWP2Q15269 919 aaKnown RBP16.24■□□□□ 0.19
LIMS1-201ENST00000332345 MICU3Q86XE3 530 aa16.24■□□□□ 0.19
LIMS1-201ENST00000332345 CCDC144CPQ8IYA2 1237 aa16.24■□□□□ 0.19
LIMS1-201ENST00000332345 MPHOSPH6Q99547 160 aaKnown RBP16.24■□□□□ 0.19
LIMS1-201ENST00000332345 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.24■□□□□ 0.19
LIMS1-201ENST00000332345 SEC63Q9UGP8 760 aaKnown RBP16.24■□□□□ 0.19
LIMS1-201ENST00000332345 BRPF3Q9ULD4 1205 aa16.24■□□□□ 0.19
LIMS1-201ENST00000332345 NAP1L2Q9ULW6 460 aaPredicted RBP16.24■□□□□ 0.19
LIMS1-201ENST00000332345 KLF18A0A0U1RQI7 1052 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms