RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 CORO7P57737 925 aa17.44■□□□□ 0.38
SHROOM1-201ENST00000319854 MSANTD4Q8NCY6 345 aa17.44■□□□□ 0.38
SHROOM1-201ENST00000319854 GEMIN8Q9NWZ8 242 aaKnown RBP17.44■□□□□ 0.38
SHROOM1-201ENST00000319854 TMEM260Q9NX78 707 aa17.44■□□□□ 0.38
SHROOM1-201ENST00000319854 PDS5AQ29RF7 1337 aaKnown RBP17.44■□□□□ 0.38
SHROOM1-201ENST00000319854 TRIM49BA6NDI0 452 aa17.44■□□□□ 0.38
SHROOM1-201ENST00000319854 ATP2B4P23634 1241 aa17.44■□□□□ 0.38
SHROOM1-201ENST00000319854 COA7Q96BR5 231 aa17.44■□□□□ 0.38
SHROOM1-201ENST00000319854 KCNQ5Q9NR82 932 aa17.44■□□□□ 0.38
SHROOM1-201ENST00000319854 CDC23Q9UJX2 597 aa17.44■□□□□ 0.38
SHROOM1-201ENST00000319854 SMCO2A6NFE2 343 aa17.43■□□□□ 0.38
SHROOM1-201ENST00000319854 BMP15O95972 392 aa17.43■□□□□ 0.38
SHROOM1-201ENST00000319854 TAB2Q9NYJ8 693 aa17.43■□□□□ 0.38
SHROOM1-201ENST00000319854 TTF2Q9UNY4 1162 aaKnown RBP17.43■□□□□ 0.38
SHROOM1-201ENST00000319854 TCP10Q12799 353 aa17.43■□□□□ 0.38
SHROOM1-201ENST00000319854 E2F4Q16254 413 aa17.43■□□□□ 0.38
SHROOM1-201ENST00000319854 DPP8Q6V1X1 898 aaPredicted RBP17.43■□□□□ 0.38
SHROOM1-201ENST00000319854 PPP1R3GB7ZBB8 358 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 STXBP3O00186 592 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 RHBDL3P58872 404 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 ZNF569Q5MCW4 686 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 IGSF22Q8N9C0 903 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 ZC3H12CQ9C0D7 883 aaKnown RBP17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 DAGLAQ9Y4D2 1042 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 PCDHAC2Q9Y5I4 1007 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 ADGRG1Q9Y653 693 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 ERCC3P19447 782 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 ZNF622Q969S3 477 aaKnown RBP eCLIP17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 FAM204AQ9H8W3 233 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 SEC63Q9UGP8 760 aaKnown RBP17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 TRPC5Q9UL62 973 aaPredicted RBP17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 GPR75-ASB3A0A0A6YYF3 556 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 SLC16A2P36021 539 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 PPP4CP60510 307 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 RBL2Q08999 1139 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 SPATA1Q5VX52 437 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 TRIML1Q8N9V2 468 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 SPATA20Q8TB22 786 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 SECISBP2LQ93073 1101 aaKnown RBP17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 DBNDD1Q9H9R9 158 aa17.42■□□□□ 0.38
SHROOM1-201ENST00000319854 PPEF1O14829 653 aaPredicted RBP17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 N4BP3O15049 544 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 TECP42680 631 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 SH3RF1Q7Z6J0 888 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 NOA1Q8NC60 698 aaKnown RBP17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 GJA10Q969M2 543 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 DDX4Q9NQI0 724 aaKnown RBP17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 BARHL2Q9NY43 387 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 CCDC175P0C221 793 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 AKR1B1P15121 316 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 GNAQP50148 359 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 RBM5P52756 815 aaKnown RBP eCLIP17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 CRY2Q49AN0 593 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 SOGA3Q5TF21 947 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 PDXDC2PQ6P474 469 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 PPFIBP1Q86W92 1011 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 GPIHBP1Q8IV16 184 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 NELFBQ8WX92 580 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 HPS3Q969F9 1004 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 GSDMAQ96QA5 445 aa17.41■□□□□ 0.38
SHROOM1-201ENST00000319854 POLRMTO00411 1230 aaKnown RBP17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 SHROOM1Q2M3G4 852 aaPredicted RBP17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 KIF4BQ2VIQ3 1234 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 PALM3A6NDB9 673 aaPredicted RBP17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 BBOX1O75936 387 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 RPN1P04843 607 aaKnown RBP17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 ERCC5P28715 1186 aaPredicted RBP17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 TXKP42681 527 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 CERS5Q8N5B7 392 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 RRP36Q96EU6 259 aaKnown RBP17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 ZNF287Q9HBT7 754 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 EIF3JO75822 258 aaKnown RBP17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 CASP14P31944 242 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 PRCPP42785 496 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 NR1I3Q14994 352 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 TXNRD1Q16881 649 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 C16orf86Q6ZW13 317 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 PROM2Q8N271 834 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 SLC35F6Q8N357 371 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 CEP112Q8N8E3 955 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 C4orf32Q8N8J7 132 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 CCDC148Q8NFR7 591 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 USP40Q9NVE5 1235 aa17.4■□□□□ 0.38
SHROOM1-201ENST00000319854 SPATA31A6Q5VVP1 1343 aa17.39■□□□□ 0.37
SHROOM1-201ENST00000319854 KIAA0825Q8IV33 1275 aa17.39■□□□□ 0.37
SHROOM1-201ENST00000319854 CCDC88AQ3V6T2 1871 aa17.39■□□□□ 0.37
SHROOM1-201ENST00000319854 ERLIN1O75477 346 aa17.39■□□□□ 0.37
SHROOM1-201ENST00000319854 IL1R1P14778 569 aa17.39■□□□□ 0.37
SHROOM1-201ENST00000319854 TRAPPC10P48553 1259 aa17.39■□□□□ 0.37
SHROOM1-201ENST00000319854 CCDC178Q5BJE1 867 aa17.39■□□□□ 0.37
SHROOM1-201ENST00000319854 TTBK2Q6IQ55 1244 aa17.39■□□□□ 0.37
SHROOM1-201ENST00000319854 TBCKQ8TEA7 893 aa17.39■□□□□ 0.37
SHROOM1-201ENST00000319854 DISC1Q9NRI5 854 aa17.39■□□□□ 0.37
SHROOM1-201ENST00000319854 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.38■□□□□ 0.37
SHROOM1-201ENST00000319854 KRT27Q7Z3Y8 459 aa17.38■□□□□ 0.37
SHROOM1-201ENST00000319854 FAM71BQ8TC56 605 aa17.38■□□□□ 0.37
SHROOM1-201ENST00000319854 LRRC15Q8TF66 581 aa17.38■□□□□ 0.37
SHROOM1-201ENST00000319854 PPM1EQ8WY54 764 aa17.38■□□□□ 0.37
SHROOM1-201ENST00000319854 RIN2Q8WYP3 895 aaPredicted RBP17.38■□□□□ 0.37
SHROOM1-201ENST00000319854 SYF2O95926 243 aaKnown RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms