RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 IMPACTQ9P2X3 320 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 BTBD18B2RXH4 712 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 GOLGA8KD6RF30 607 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 LRRC24Q50LG9 513 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 CCDC125Q86Z20 511 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 MLKLQ8NB16 471 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 PARD3BQ8TEW8 1205 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 NYXQ9GZU5 481 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 WDR7Q9Y4E6 1490 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 GAS7O60861 476 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 OATP04181 439 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 RPN1P04843 607 aaKnown RBP13.82□□□□□ -0.2
USP38-201ENST00000307017 IL2RBP14784 551 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 GTF2IP78347 998 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 TCP11X2Q5H9J9 407 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.82□□□□□ -0.2
USP38-201ENST00000307017 NUP58Q9BVL2 599 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 KIAA1468Q9P260 1216 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 DENND2AQ9ULE3 1009 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 ADGRL1O94910 1474 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 XRCC5P13010 732 aaKnown RBP13.82□□□□□ -0.2
USP38-201ENST00000307017 HOXC9P31274 260 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 ZNF445P59923 1031 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 GABPB1Q06547 395 aaPredicted RBP13.82□□□□□ -0.2
USP38-201ENST00000307017 FAM133AQ8N9E0 248 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 ARHGAP45Q92619 1136 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 RAB17Q9H0T7 212 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 PCDHA7Q9UN72 937 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 SFI1A8K8P3 1242 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 M0R2C6 588 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 SGSM2O43147 1006 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 PPARAQ07869 468 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 CDO1Q16878 200 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 EEPD1Q7L9B9 569 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 SMCR8Q8TEV9 937 aaPredicted RBP13.82□□□□□ -0.2
USP38-201ENST00000307017 NSMCE1Q8WV22 266 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 DDX25Q9UHL0 483 aaKnown RBP13.82□□□□□ -0.2
USP38-201ENST00000307017 ANKRD36BQ8N2N9 1353 aa13.82□□□□□ -0.2
USP38-201ENST00000307017 IL16Q14005 1332 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 LIG4P49917 911 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 XKR9Q5GH70 373 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 ANGPTL8Q6UXH0 198 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 SYCE1Q8N0S2 351 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 ANKRD35Q8N283 1001 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 ARHGEF10LQ9HCE6 1279 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 GADL1Q6ZQY3 521 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 ARHGAP24Q8N264 748 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 DNAJC6O75061 913 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 ADORA1P30542 326 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 HSPA2P54652 639 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 CNBD1Q8NA66 436 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 TTLL11Q8NHH1 800 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 CEP70Q8NHQ1 597 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 AZI2Q9H6S1 392 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 PCDHB4Q9Y5E5 795 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 ABCC1P33527 1531 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 NAA30Q147X3 362 aaPredicted RBP13.81□□□□□ -0.2
USP38-201ENST00000307017 DPCR1Q3MIW9 517 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 TTC30AQ86WT1 665 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 NUDCD3Q8IVD9 361 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 HSPH1Q92598 858 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 LRRIQ4A6NIV6 560 aa13.81□□□□□ -0.2
USP38-201ENST00000307017 MYCBPQ99417 103 aaPredicted RBP13.81□□□□□ -0.2
USP38-201ENST00000307017 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.81□□□□□ -0.2
USP38-201ENST00000307017 PLCH2O75038 1416 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 USP17L12C9JPN9 530 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 USP17L21D6R901 530 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 STAT1P42224 750 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 SF3B3Q15393 1217 aaKnown RBP13.8□□□□□ -0.2
USP38-201ENST00000307017 TRAPPC3LQ5T215 181 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 AP1ARQ63HQ0 302 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 SZRD1Q7Z422 152 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.8□□□□□ -0.27e-8■■■■□ 20.8
USP38-201ENST00000307017 IRAK4Q9NWZ3 460 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 HACD3Q9P035 362 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 MSH2P43246 934 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 PDE6CP51160 858 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 ACTN3Q08043 901 aaPredicted RBP13.8□□□□□ -0.2
USP38-201ENST00000307017 TAF11Q15544 211 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 ATP2A3Q93084 1043 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 CNOT6LQ96LI5 555 aaKnown RBP13.8□□□□□ -0.2
USP38-201ENST00000307017 GPR101Q96P66 508 aaPredicted RBP13.8□□□□□ -0.2
USP38-201ENST00000307017 EYA3Q99504 573 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 INTS9Q9NV88 658 aaKnown RBP13.8□□□□□ -0.2
USP38-201ENST00000307017 BCS1LQ9Y276 419 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 MGEA5O60502 916 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 GFPT2O94808 682 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 BFSP1Q12934 665 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 AGR3Q8TD06 166 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 C14orf93Q9H972 538 aaKnown RBP13.8□□□□□ -0.2
USP38-201ENST00000307017 HYOU1Q9Y4L1 999 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 FAM98CQ17RN3 349 aaKnown RBP13.8□□□□□ -0.2
USP38-201ENST00000307017 UNC5CLQ8IV45 518 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 DEPTORQ8TB45 409 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 FGD4Q96M96 766 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 GJB4Q9NTQ9 266 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 RIMS2Q9UQ26 1411 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 GOLGA8IPA6NC78 632 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 GOLGA8JA6NMD2 632 aa13.8□□□□□ -0.2
USP38-201ENST00000307017 NVLO15381 856 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms