RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 TSPY2A6NKD2 308 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 HNRNPCL2B2RXH8 293 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 HNRNPCL1O60812 293 aaKnown RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 TSPY3P0CV98 308 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 TSPY8P0CW00 308 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 TSPY1Q01534 308 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 GUCY1B3Q02153 619 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 TFCP2Q12800 502 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 TRAF1Q13077 416 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 HSP90AA4PQ58FG1 418 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 LMBR1LQ6UX01 489 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 RAB3IPQ96QF0 476 aaPredicted RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 MAP3K14Q99558 947 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS35-201ENST00000299138 EIF2AQ9BY44 585 aaKnown RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 PLCB1Q9NQ66 1216 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 TCP11L1Q9NUJ3 509 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 BZW2Q9Y6E2 419 aaKnown RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 NUTM2BA6NNL0 878 aaPredicted RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 NUTM2EB1AL46 878 aaPredicted RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 CCDC188H7C350 402 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 CES2O00748 559 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 FLOT1O75955 427 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 PCCAP05165 728 aaPredicted RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 KRT2P35908 639 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 HSPA2P54652 639 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 E2F4Q16254 413 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS35-201ENST00000299138 TTLL7Q6ZT98 887 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 TC2NQ8N9U0 490 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 CCT6BQ92526 530 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 SCINQ9Y6U3 715 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 SH2B2O14492 632 aaPredicted RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 GFPT2O94808 682 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 CPA1P15085 419 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 KRT9P35527 623 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 SLC9A5Q14940 896 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 CDKAL1Q5VV42 579 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 TOM1L2Q6ZVM7 507 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 DNAJC5Q9H3Z4 198 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 SCHIP1Q9P0W5 487 aaPredicted RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 MAN1A2O60476 641 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 LUC7L3O95232 432 aaKnown RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 RGPD1P0DJD0 1748 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 KARSQ15046 597 aaKnown RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 HSP90AA5PQ58FG0 334 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 FAM173BQ6P4H8 233 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 BTN2A1Q7KYR7 527 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 FERMT1Q9BQL6 677 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 PDE11AQ9HCR9 933 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 NKIRAS1Q9NYS0 192 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 CRYBG1Q9Y4K1 1723 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 NALCNQ8IZF0 1738 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 MMP1P03956 469 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 LIG3P49916 1009 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 CCT2P78371 535 aaKnown RBP7.04□□□□□ -1.28
VPS35-201ENST00000299138 TRPC3Q13507 836 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 TCERG1LQ5VWI1 586 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 PPP4R3AQ6IN85 833 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 SPATA20Q8TB22 786 aa7.04□□□□□ -1.28
VPS35-201ENST00000299138 RNF40O75150 1001 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 COPS6Q7L5N1 327 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 MREGQ8N565 214 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 SYN2Q92777 582 aaPredicted RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 ADD3Q9UEY8 706 aaKnown RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 ZNF711Q9Y462 761 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 SLC4A7Q9Y6M7 1214 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 MROH5Q6ZUA9 1318 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 PNPLA7Q6ZV29 1317 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 ATRNO75882 1429 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 E7EVH7 732 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 MYCNP04198 464 aaPredicted RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 ATP5DP30049 168 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 TRIM60Q495X7 471 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 N4BP2L2Q92802 583 aaPredicted RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 NOX5Q96PH1 765 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 GOLPH3LQ9H4A5 285 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 STK25O00506 426 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 RFX5P48382 616 aaPredicted RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 SARSP49591 514 aaKnown RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 SNX16P57768 344 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 CABP4P57796 275 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 E2F5Q15329 346 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 EMC10Q5UCC4 262 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 GRAMD4Q6IC98 578 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 CNNM4Q6P4Q7 775 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 KIAA2013Q8IYS2 634 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 FAM204AQ9H8W3 233 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 TXNDC16Q9P2K2 825 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 SSU72P8A0A1W2PR75 194 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 SART1O43290 800 aaKnown RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 AKR1B10O60218 316 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 COBLL1Q53SF7 1204 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 CD302Q8IX05 232 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 AKAP12Q02952 1782 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 SHOX2O60902 331 aaPredicted RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 STARD3NLO95772 234 aa7.03□□□□□ -1.28
VPS35-201ENST00000299138 POLR3DP05423 398 aaPredicted RBP7.03□□□□□ -1.28
VPS35-201ENST00000299138 HNRNPCP07910 306 aaKnown RBP eCLIP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms