RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 ACER1Q8TDN7 264 aa16.19■□□□□ 0.18
C9orf3-202ENST00000297979 CCDC34Q96HJ3 373 aa16.19■□□□□ 0.18
C9orf3-202ENST00000297979 A0A087X0B3 334 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 TMEM232C9JQI7 657 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 MRPL12P52815 198 aaKnown RBP16.18■□□□□ 0.18
C9orf3-202ENST00000297979 ORC2Q13416 577 aaPredicted RBP16.18■□□□□ 0.18
C9orf3-202ENST00000297979 BTNL9Q6UXG8 535 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 DHX58Q96C10 678 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 TMEM60Q9H2L4 133 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 SCAF8Q9UPN6 1271 aaKnown RBP16.18■□□□□ 0.18
C9orf3-202ENST00000297979 CCNT1O60563 726 aaKnown RBP16.18■□□□□ 0.18
C9orf3-202ENST00000297979 PRPHP41219 470 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 DTHD1Q6ZMT9 781 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 TEPSINQ96N21 525 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 GLT8D2Q9H1C3 349 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 GOLGA6L19H0YKK7 550 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 FOXN1O15353 648 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 AP5Z1O43299 807 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 ASNSP08243 561 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 CLK2P49760 499 aaKnown RBP16.18■□□□□ 0.18
C9orf3-202ENST00000297979 SPICE1Q8N0Z3 855 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 PYM1Q9BRP8 204 aaKnown RBP16.18■□□□□ 0.18
C9orf3-202ENST00000297979 SH2D4AQ9H788 454 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 PSTPIP2Q9H939 334 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 HACL1Q9UJ83 578 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 PCDHA1Q9Y5I3 950 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 ATAD5Q96QE3 1844 aa16.18■□□□□ 0.18
C9orf3-202ENST00000297979 DICER1Q9UPY3 1922 aaKnown RBP16.18■□□□□ 0.18
C9orf3-202ENST00000297979 BECN2A8MW95 431 aa16.17■□□□□ 0.18
C9orf3-202ENST00000297979 NEMFO60524 1076 aa16.17■□□□□ 0.18
C9orf3-202ENST00000297979 SLFN14P0C7P3 912 aa16.17■□□□□ 0.18
C9orf3-202ENST00000297979 ARHGAP27Q6ZUM4 889 aa16.17■□□□□ 0.18
C9orf3-202ENST00000297979 BPIFA3Q9BQP9 254 aa16.17■□□□□ 0.18
C9orf3-202ENST00000297979 PCDHA5Q9Y5H7 936 aa16.17■□□□□ 0.18
C9orf3-202ENST00000297979 OR52Z1P0C646 297 aa16.17■□□□□ 0.18
C9orf3-202ENST00000297979 UBE2SQ16763 222 aa16.17■□□□□ 0.18
C9orf3-202ENST00000297979 HS1BP3Q53T59 392 aa16.17■□□□□ 0.18
C9orf3-202ENST00000297979 DHX40Q8IX18 779 aaKnown RBP16.17■□□□□ 0.18
C9orf3-202ENST00000297979 AMNQ9BXJ7 453 aa16.17■□□□□ 0.18
C9orf3-202ENST00000297979 ASTN2O75129 1339 aaPredicted RBP16.16■□□□□ 0.18
C9orf3-202ENST00000297979 TXLNAP40222 546 aa16.16■□□□□ 0.18
C9orf3-202ENST00000297979 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.16■□□□□ 0.18
C9orf3-202ENST00000297979 PHF20L1A8MW92 1017 aa16.16■□□□□ 0.18
C9orf3-202ENST00000297979 H7C1D1 291 aa16.16■□□□□ 0.18
C9orf3-202ENST00000297979 PTMAP06454 111 aaKnown RBP16.16■□□□□ 0.18
C9orf3-202ENST00000297979 PRR29P0C7W0 189 aa16.16■□□□□ 0.18
C9orf3-202ENST00000297979 LMNB1P20700 586 aa16.16■□□□□ 0.18
C9orf3-202ENST00000297979 STAT2P52630 851 aa16.16■□□□□ 0.18
C9orf3-202ENST00000297979 KIAA1755Q5JYT7 1200 aa16.16■□□□□ 0.18
C9orf3-202ENST00000297979 VCPKMTQ9H867 229 aa16.16■□□□□ 0.18
C9orf3-202ENST00000297979 FBXO11Q86XK2 927 aa16.15■□□□□ 0.18
C9orf3-202ENST00000297979 GRAMD1CQ8IYS0 662 aa16.15■□□□□ 0.18
C9orf3-202ENST00000297979 AOPEPQ8N6M6 819 aa16.15■□□□□ 0.18
C9orf3-202ENST00000297979 IQUBQ8NA54 791 aa16.15■□□□□ 0.18
C9orf3-202ENST00000297979 FHDC1Q9C0D6 1143 aaPredicted RBP16.15■□□□□ 0.18
C9orf3-202ENST00000297979 NT5DC1Q5TFE4 455 aa16.15■□□□□ 0.18
C9orf3-202ENST00000297979 SMARCE1Q969G3 411 aa16.15■□□□□ 0.18
C9orf3-202ENST00000297979 DEFB129Q9H1M3 183 aa16.15■□□□□ 0.18
C9orf3-202ENST00000297979 CCDC39Q9UFE4 941 aa16.15■□□□□ 0.18
C9orf3-202ENST00000297979 PRR12Q9ULL5 1215 aa16.15■□□□□ 0.18
C9orf3-202ENST00000297979 SNAP25P60880 206 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 E2F4Q16254 413 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 FAM83BQ5T0W9 1011 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 ISM2Q6H9L7 571 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 VGLL3A8MV65 326 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 SARSP49591 514 aaKnown RBP16.14■□□□□ 0.17
C9orf3-202ENST00000297979 SH3RF1Q7Z6J0 888 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 GPC2Q8N158 579 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 PAGE5Q96GU1 130 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 ZYXQ15942 572 aaKnown RBP16.14■□□□□ 0.17
C9orf3-202ENST00000297979 GINM1Q9NU53 330 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 GPRC5DQ9NZD1 345 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 MAN1B1Q9UKM7 699 aa16.14■□□□□ 0.17
C9orf3-202ENST00000297979 SMC2O95347 1197 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 POTEDQ86YR6 584 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 TRIML1Q8N9V2 468 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 SPATA20Q8TB22 786 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 AK8Q96MA6 479 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 GLIS2Q9BZE0 524 aaPredicted RBP16.13■□□□□ 0.17
C9orf3-202ENST00000297979 SBF1O95248 1867 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 AFMP43652 599 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 USH1GQ495M9 461 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 APOBEC3FQ8IUX4 373 aaKnown RBP16.13■□□□□ 0.17
C9orf3-202ENST00000297979 CHURC1Q8WUH1 139 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 FEZ1Q99689 392 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 CCSER1Q9C0I3 900 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 TMEM51Q9NW97 253 aa16.13■□□□□ 0.17
C9orf3-202ENST00000297979 USP17L15C9J2P7 530 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 USP17L13C9JLJ4 530 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 USP17L11C9JVI0 530 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 USP17L18D6R9N7 530 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 USP17L22D6RA61 530 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 USP17L17D6RBQ6 530 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 USP17L19D6RCP7 530 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 USP17L20D6RJB6 530 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 EDIL3O43854 480 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 TDP2O95551 362 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 CDC25AP30304 524 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 UBA7P41226 1012 aa16.12■□□□□ 0.17
C9orf3-202ENST00000297979 USP17L24Q0WX57 530 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms