RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SKIDA1Q1XH10 827 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 TSR1Q2NL82 804 aaKnown RBP18.66■□□□□ 0.58
VPS54-201ENST00000272322 CNGA4Q8IV77 575 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 CCDC155Q8N6L0 562 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 PLEKHA4Q9H4M7 779 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 MORC2Q9Y6X9 1032 aaPredicted RBP18.66■□□□□ 0.58
VPS54-201ENST00000272322 PSMA7O14818 248 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 OR52Z1P0C646 297 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 ANKRD40Q6AI12 368 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 REXO1Q8N1G1 1221 aaKnown RBP18.66■□□□□ 0.58
VPS54-201ENST00000272322 DBNDD1Q9H9R9 158 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 C6orf50Q9HD87 102 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 LUC7L2Q9Y383 392 aaKnown RBP18.66■□□□□ 0.58
VPS54-201ENST00000272322 MRFAP1Q9Y605 127 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 FHOD1Q9Y613 1164 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 PALM3A6NDB9 673 aaPredicted RBP18.65■□□□□ 0.58
VPS54-201ENST00000272322 SASH3O75995 380 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 H2AFXP16104 143 aaPredicted RBP18.65■□□□□ 0.58
VPS54-201ENST00000272322 GNAQP50148 359 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 KRT26Q7Z3Y9 468 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 KIAA0825Q8IV33 1275 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 SEPT12Q8IYM1 358 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 ANKRD13CQ8N6S4 541 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 TBC1D16Q8TBP0 767 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 TANGO6Q9C0B7 1094 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 DDX4Q9NQI0 724 aaKnown RBP18.65■□□□□ 0.58
VPS54-201ENST00000272322 ECM29Q5VYK3 1845 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 SLC37A4O43826 429 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 GYS1P13807 737 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 TRAPPC10P48553 1259 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 CHMP4BP1P59074 171 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 BMS1Q14692 1282 aaKnown RBP18.65■□□□□ 0.58
VPS54-201ENST00000272322 ST5P78524 1137 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 IKQ13123 557 aaPredicted RBP18.65■□□□□ 0.58
VPS54-201ENST00000272322 SLC30A10Q6XR72 485 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 KCND1Q9NSA2 647 aa18.65■□□□□ 0.58
VPS54-201ENST00000272322 NFIAQ12857 509 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 STIM1Q13586 685 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 NEK8Q86SG6 692 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 ZFPM1Q8IX07 1006 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 PANX2Q96RD6 677 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 TUBGCP2Q9BSJ2 902 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 LRP5O75197 1615 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 PLEKP08567 350 aaPredicted RBP18.64■□□□□ 0.57
VPS54-201ENST00000272322 ADSSL1Q8N142 457 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 SMCR8Q8TEV9 937 aaPredicted RBP18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP40Q9NVE5 1235 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 RMND1Q9NWS8 449 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 LRWD1Q9UFC0 647 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 DAGLAQ9Y4D2 1042 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 EFCAB8A8MWE9 144 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP17L15C9J2P7 530 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP17L13C9JLJ4 530 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP17L11C9JVI0 530 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP17L18D6R9N7 530 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP17L22D6RA61 530 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP17L17D6RBQ6 530 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP17L19D6RCP7 530 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP17L20D6RJB6 530 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 KCNJ6P48051 423 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP17L24Q0WX57 530 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 USP17L6PQ6QN14 398 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 KIAA1328Q86T90 577 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 ZNF622Q969S3 477 aaKnown RBP eCLIP18.64■□□□□ 0.573e-6■□□□□ 10.4
VPS54-201ENST00000272322 MMRN2Q9H8L6 949 aa18.64■□□□□ 0.57
VPS54-201ENST00000272322 RC3H1Q5TC82 1133 aaKnown RBP18.63■□□□□ 0.57
VPS54-201ENST00000272322 TRMT1LQ7Z2T5 733 aaKnown RBP18.63■□□□□ 0.57
VPS54-201ENST00000272322 ZC3H12CQ9C0D7 883 aaKnown RBP18.63■□□□□ 0.57
VPS54-201ENST00000272322 EPN1Q9Y6I3 576 aaPredicted RBP18.63■□□□□ 0.57
VPS54-201ENST00000272322 CTAGE9A4FU28 777 aa18.63■□□□□ 0.57
VPS54-201ENST00000272322 PBX1P40424 430 aa18.63■□□□□ 0.57
VPS54-201ENST00000272322 PLA2G4AP47712 749 aa18.63■□□□□ 0.57
VPS54-201ENST00000272322 ARID5AQ03989 594 aa18.63■□□□□ 0.57
VPS54-201ENST00000272322 CRACR2AQ9BSW2 395 aa18.63■□□□□ 0.57
VPS54-201ENST00000272322 NOC4LQ9BVI4 516 aaKnown RBP18.63■□□□□ 0.57
VPS54-201ENST00000272322 MATR3P43243 847 aaKnown RBP eCLIP18.62■□□□□ 0.578e-7■■■□□ 17.3
VPS54-201ENST00000272322 RHBDL3P58872 404 aa18.62■□□□□ 0.57
VPS54-201ENST00000272322 CCDC122Q5T0U0 273 aa18.62■□□□□ 0.57
VPS54-201ENST00000272322 ARL6IP4Q66PJ3 421 aaKnown RBP18.62■□□□□ 0.57
VPS54-201ENST00000272322 NELFCDQ8IXH7 590 aa18.62■□□□□ 0.57
VPS54-201ENST00000272322 ELOA2Q8IYF1 753 aaPredicted RBP18.62■□□□□ 0.57
VPS54-201ENST00000272322 KLRC4O43908 158 aa18.62■□□□□ 0.57
VPS54-201ENST00000272322 DDR1Q08345 913 aa18.62■□□□□ 0.57
VPS54-201ENST00000272322 CALCRLQ16602 461 aa18.62■□□□□ 0.57
VPS54-201ENST00000272322 MB21D1Q8N884 522 aa18.62■□□□□ 0.57
VPS54-201ENST00000272322 CNOT6LQ96LI5 555 aaKnown RBP18.62■□□□□ 0.57
VPS54-201ENST00000272322 TRIM9Q9C026 710 aa18.62■□□□□ 0.57
VPS54-201ENST00000272322 USP17L10C9JJH3 530 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 MYO1BO43795 1136 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 GNA11P29992 359 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 APBA1Q02410 837 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 CYP26C1Q6V0L0 522 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 KCNK18Q7Z418 384 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 NOA1Q8NC60 698 aaKnown RBP18.61■□□□□ 0.57
VPS54-201ENST00000272322 SNX29Q8TEQ0 813 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 GOLGA6L9A6NEM1 432 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 PDHBP11177 359 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 PTPROQ16827 1216 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 FCHSD1Q86WN1 690 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 RGS22Q8NE09 1264 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms