RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.48□□□□□ -0.57
VPS41-201ENST00000265745 ZNF236Q9UL36 1845 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 POTEB2H3BUK9 544 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 DUSP11O75319 330 aaKnown RBP11.47□□□□□ -0.57
VPS41-201ENST00000265745 TOP1P11387 765 aaKnown RBP11.47□□□□□ -0.57
VPS41-201ENST00000265745 MFAP1P55081 439 aaKnown RBP11.47□□□□□ -0.57
VPS41-201ENST00000265745 TLE2Q04725 743 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 AKNAD1Q5T1N1 836 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 CCSAPQ6IQ19 270 aaPredicted RBP11.47□□□□□ -0.57
VPS41-201ENST00000265745 TTBK2Q6IQ55 1244 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 CWC27Q6UX04 472 aaKnown RBP11.47□□□□□ -0.57
VPS41-201ENST00000265745 BTNL9Q6UXG8 535 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 MFSD6Q6ZSS7 791 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 ARMCX2Q7L311 632 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 CCDC144CPQ8IYA2 1237 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 KLHDC9Q8NEP7 349 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 MS4A3Q96HJ5 214 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 TTC14Q96N46 770 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 TRERF1Q96PN7 1200 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 TSEN34Q9BSV6 310 aaKnown RBP11.47□□□□□ -0.57
VPS41-201ENST00000265745 A1CFQ9NQ94 594 aaKnown RBP11.47□□□□□ -0.57
VPS41-201ENST00000265745 RNF146Q9NTX7 359 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 PRKAG2Q9UGJ0 569 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 ZHX1Q9UKY1 873 aaPredicted RBP11.47□□□□□ -0.57
VPS41-201ENST00000265745 MTMR7Q9Y216 660 aa11.47□□□□□ -0.57
VPS41-201ENST00000265745 SUPT16HQ9Y5B9 1047 aaKnown RBP11.47□□□□□ -0.57
VPS41-201ENST00000265745 GREB1LQ9C091 1923 aaPredicted RBP11.47□□□□□ -0.57
VPS41-201ENST00000265745 A0A1W2PQ45 241 aaPredicted RBP11.46□□□□□ -0.57
VPS41-201ENST00000265745 A0A1W2PQY0 241 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 TRIM43BA6NCK2 446 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 SOWAHBA6NEL2 793 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 ICAM1P05362 532 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 ALAS1P13196 640 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 SLC16A2P36021 539 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 ACLYP53396 1101 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 KCNA10Q16322 511 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 CCDC96Q2M329 555 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 CCDC144BQ3MJ40 725 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 MUM1L1Q5H9M0 696 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 CCDC174Q6PII3 467 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 TBC1D10CQ8IV04 446 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 TRIM43Q96BQ3 446 aaPredicted RBP11.46□□□□□ -0.57
VPS41-201ENST00000265745 KATNBL1Q9H079 304 aa11.46□□□□□ -0.57
VPS41-201ENST00000265745 RANBP17Q9H2T7 1088 aaKnown RBP11.46□□□□□ -0.57
VPS41-201ENST00000265745 RNF41Q9H4P4 317 aaPredicted RBP11.46□□□□□ -0.57
VPS41-201ENST00000265745 SYNRGQ9UMZ2 1314 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 MOXD2PA6NHM9 499 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 ASB14A6NK59 587 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 HIP1O00291 1037 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 ZNF213O14771 459 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 ADCY6O43306 1168 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 PDHBP11177 359 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 CST5P28325 142 aaPredicted RBP11.45□□□□□ -0.58
VPS41-201ENST00000265745 IRX5P78411 483 aaPredicted RBP11.45□□□□□ -0.58
VPS41-201ENST00000265745 SYDE2Q5VT97 1194 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 SH3RF1Q7Z6J0 888 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 ESR2Q92731 530 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 GPCPD1Q9NPB8 672 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 PDLIM7Q9NR12 457 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 DIAPH3Q9NSV4 1193 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 CYP39A1Q9NYL5 469 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 CCPG1Q9ULG6 757 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 MYH7P12883 1935 aa11.45□□□□□ -0.58
VPS41-201ENST00000265745 ASTN1O14525 1302 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 FRMPD2Q68DX3 1309 aaPredicted RBP11.44□□□□□ -0.58
VPS41-201ENST00000265745 MYADML2A6NDP7 307 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 SNHG28P0DPA3 235 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 NT5C2P49902 561 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 GJA9P57773 515 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 NKX3-2P78367 333 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 ZNF543Q08ER8 600 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 ANKRD33Q7Z3H0 272 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 DGKHQ86XP1 1220 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 NUP133Q8WUM0 1156 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 BADQ92934 168 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 TOX2Q96NM4 488 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 UPF3AQ9H1J1 476 aaKnown RBP11.44□□□□□ -0.58
VPS41-201ENST00000265745 PRDM5Q9NQX1 630 aaPredicted RBP11.44□□□□□ -0.58
VPS41-201ENST00000265745 STARD7Q9NQZ5 370 aa11.44□□□□□ -0.58
VPS41-201ENST00000265745 ELP1O95163 1332 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 NEDD4P46934 1319 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 CTAGE5O15320 804 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 PQBP1O60828 265 aaKnown RBP11.43□□□□□ -0.58
VPS41-201ENST00000265745 CLTBP09497 229 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 C6orf222P0C671 652 aaPredicted RBP11.43□□□□□ -0.58
VPS41-201ENST00000265745 ITGB8P26012 769 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 MLLT3P42568 568 aaPredicted RBP11.43□□□□□ -0.58
VPS41-201ENST00000265745 TNFAIP2Q03169 654 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 BAATQ14032 418 aaPredicted RBP11.43□□□□□ -0.58
VPS41-201ENST00000265745 GNASQ5JWF2 1037 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 NSMFQ6X4W1 530 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 DEFB123Q8N688 67 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 PCSK9Q8NBP7 692 aaKnown RBP11.43□□□□□ -0.58
VPS41-201ENST00000265745 ANKS1AQ92625 1134 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 PURBQ96QR8 312 aaKnown RBP11.43□□□□□ -0.58
VPS41-201ENST00000265745 DSCC1Q9BVC3 393 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 SPC25Q9HBM1 224 aa11.43□□□□□ -0.58
VPS41-201ENST00000265745 GNEQ9Y223 722 aaKnown RBP11.43□□□□□ -0.58
VPS41-201ENST00000265745 DDX49Q9Y6V7 483 aaKnown RBP11.43□□□□□ -0.58
VPS41-201ENST00000265745 DNAH12Q6ZR08 3092 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms