RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ZFP91Q96JP5 570 aaPredicted RBP18.76■□□□□ 0.59
USP4-201ENST00000265560 P2RX7Q99572 595 aaKnown RBP18.76■□□□□ 0.59
USP4-201ENST00000265560 COL2A1P02458 1487 aaPredicted RBP18.76■□□□□ 0.59
USP4-201ENST00000265560 CTAGE5O15320 804 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 STAT2P52630 851 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 GALNT17Q6IS24 598 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 FAM200AQ8TCP9 573 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 MTMR8Q96EF0 704 aa18.76■□□□□ 0.59
USP4-201ENST00000265560 TRAPPC10P48553 1259 aa18.75■□□□□ 0.59
USP4-201ENST00000265560 KRT25Q7Z3Z0 450 aa18.75■□□□□ 0.59
USP4-201ENST00000265560 NEK8Q86SG6 692 aa18.75■□□□□ 0.59
USP4-201ENST00000265560 WRNIP1Q96S55 665 aa18.75■□□□□ 0.59
USP4-201ENST00000265560 GOPCQ9HD26 462 aa18.75■□□□□ 0.59
USP4-201ENST00000265560 SLC37A4O43826 429 aa18.75■□□□□ 0.59
USP4-201ENST00000265560 CUL5Q93034 780 aa18.75■□□□□ 0.59
USP4-201ENST00000265560 VCPKMTQ9H867 229 aa18.75■□□□□ 0.59
USP4-201ENST00000265560 PCDHA5Q9Y5H7 936 aa18.75■□□□□ 0.59
USP4-201ENST00000265560 KARSQ15046 597 aaKnown RBP18.74■□□□□ 0.59
USP4-201ENST00000265560 FBXO11Q86XK2 927 aa18.74■□□□□ 0.59
USP4-201ENST00000265560 RIC8AQ9NPQ8 531 aa18.74■□□□□ 0.59
USP4-201ENST00000265560 TXKP42681 527 aa18.74■□□□□ 0.59
USP4-201ENST00000265560 TECP42680 631 aa18.74■□□□□ 0.59
USP4-201ENST00000265560 SPP2Q13103 211 aa18.74■□□□□ 0.59
USP4-201ENST00000265560 FERMT2Q96AC1 680 aa18.74■□□□□ 0.59
USP4-201ENST00000265560 MTMR2Q13614 643 aa18.73■□□□□ 0.59
USP4-201ENST00000265560 STX1AQ16623 288 aa18.73■□□□□ 0.59
USP4-201ENST00000265560 DTHD1Q6ZMT9 781 aa18.73■□□□□ 0.59
USP4-201ENST00000265560 FCHSD1Q86WN1 690 aa18.73■□□□□ 0.59
USP4-201ENST00000265560 RASSF8Q8NHQ8 419 aa18.73■□□□□ 0.59
USP4-201ENST00000265560 ADCY5O95622 1261 aa18.73■□□□□ 0.59
USP4-201ENST00000265560 ZNF579Q8NAF0 562 aaKnown RBP18.73■□□□□ 0.59
USP4-201ENST00000265560 AMNQ9BXJ7 453 aa18.73■□□□□ 0.59
USP4-201ENST00000265560 BLZF1Q9H2G9 400 aa18.73■□□□□ 0.59
USP4-201ENST00000265560 ACTN4O43707 911 aaKnown RBP18.72■□□□□ 0.59
USP4-201ENST00000265560 NEMFO60524 1076 aa18.72■□□□□ 0.59
USP4-201ENST00000265560 MRPL12P52815 198 aaKnown RBP18.72■□□□□ 0.59
USP4-201ENST00000265560 CPXCR1Q8N123 301 aa18.72■□□□□ 0.59
USP4-201ENST00000265560 MYH7BA7E2Y1 1941 aa18.72■□□□□ 0.59
USP4-201ENST00000265560 FAM237AA0A1B0GTK4 181 aa18.72■□□□□ 0.59
USP4-201ENST00000265560 ESYT2A0FGR8 921 aa18.72■□□□□ 0.59
USP4-201ENST00000265560 ADM5C9JUS6 153 aa18.72■□□□□ 0.59
USP4-201ENST00000265560 UBXN2AP68543 259 aa18.72■□□□□ 0.59
USP4-201ENST00000265560 MAP3K10Q02779 954 aa18.72■□□□□ 0.59
USP4-201ENST00000265560 GPR162Q16538 588 aa18.72■□□□□ 0.59
USP4-201ENST00000265560 AOPEPQ8N6M6 819 aa18.72■□□□□ 0.59
USP4-201ENST00000265560 MEIS2O14770 477 aa18.71■□□□□ 0.59
USP4-201ENST00000265560 BMP15O95972 392 aa18.71■□□□□ 0.59
USP4-201ENST00000265560 CFBP00751 764 aa18.71■□□□□ 0.59
USP4-201ENST00000265560 HSP90AA4PQ58FG1 418 aa18.71■□□□□ 0.59
USP4-201ENST00000265560 TANGO6Q9C0B7 1094 aa18.71■□□□□ 0.59
USP4-201ENST00000265560 OPLAHO14841 1288 aa18.71■□□□□ 0.59
USP4-201ENST00000265560 MDM2Q00987 491 aaPredicted RBP18.71■□□□□ 0.59
USP4-201ENST00000265560 CCDC173Q0VFZ6 552 aa18.71■□□□□ 0.59
USP4-201ENST00000265560 POSTNQ15063 836 aa18.71■□□□□ 0.59
USP4-201ENST00000265560 HOMER2Q9NSB8 354 aa18.71■□□□□ 0.59
USP4-201ENST00000265560 ANO10Q9NW15 660 aa18.71■□□□□ 0.59
USP4-201ENST00000265560 DHX8Q14562 1220 aaKnown RBP18.7■□□□□ 0.58
USP4-201ENST00000265560 SLC30A10Q6XR72 485 aa18.7■□□□□ 0.58
USP4-201ENST00000265560 ZHX2Q9Y6X8 837 aa18.7■□□□□ 0.58
USP4-201ENST00000265560 BMP6P22004 513 aa18.7■□□□□ 0.58
USP4-201ENST00000265560 SPC24Q8NBT2 197 aa18.7■□□□□ 0.58
USP4-201ENST00000265560 TRIM44Q96DX7 344 aaPredicted RBP18.7■□□□□ 0.58
USP4-201ENST00000265560 AGBL1Q96MI9 1066 aa18.7■□□□□ 0.58
USP4-201ENST00000265560 TIGD1Q96MW7 591 aa18.7■□□□□ 0.58
USP4-201ENST00000265560 BECN2A8MW95 431 aa18.69■□□□□ 0.58
USP4-201ENST00000265560 hCG_1984214I3L0E3 225 aa18.69■□□□□ 0.58
USP4-201ENST00000265560 CTNND1O60716 968 aaKnown RBP18.69■□□□□ 0.58
USP4-201ENST00000265560 OR52Z1P0C646 297 aa18.69■□□□□ 0.58
USP4-201ENST00000265560 LMOD1P29536 600 aaPredicted RBP18.69■□□□□ 0.58
USP4-201ENST00000265560 CLK2P49760 499 aaKnown RBP18.69■□□□□ 0.58
USP4-201ENST00000265560 IQCB1Q15051 598 aa18.69■□□□□ 0.58
USP4-201ENST00000265560 ZNF713Q8N859 430 aaPredicted RBP18.69■□□□□ 0.58
USP4-201ENST00000265560 CNKSR2Q8WXI2 1034 aa18.69■□□□□ 0.58
USP4-201ENST00000265560 ATAD5Q96QE3 1844 aa18.69■□□□□ 0.58
USP4-201ENST00000265560 POTEMA6NI47 508 aa18.69■□□□□ 0.58
USP4-201ENST00000265560 MOB2Q70IA6 237 aa18.69■□□□□ 0.58
USP4-201ENST00000265560 SMYD4Q8IYR2 804 aaPredicted RBP18.69■□□□□ 0.58
USP4-201ENST00000265560 LRRC15Q8TF66 581 aa18.69■□□□□ 0.58
USP4-201ENST00000265560 PAGE5Q96GU1 130 aa18.69■□□□□ 0.58
USP4-201ENST00000265560 COBLO75128 1261 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 BTNL9Q6UXG8 535 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 DHX40Q8IX18 779 aaKnown RBP18.68■□□□□ 0.58
USP4-201ENST00000265560 CYP2W1Q8TAV3 490 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 WNK4Q96J92 1243 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 DICER1Q9UPY3 1922 aaKnown RBP18.68■□□□□ 0.58
USP4-201ENST00000265560 UBA7P41226 1012 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 HMGCS2P54868 508 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 CALCRLQ16602 461 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 APOBEC3FQ8IUX4 373 aaKnown RBP18.68■□□□□ 0.58
USP4-201ENST00000265560 CEP57L1Q8IYX8 460 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 PPP1R9BQ96SB3 815 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 MTRQ99707 1265 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 ANO3Q9BYT9 981 aa18.68■□□□□ 0.58
USP4-201ENST00000265560 MARCH6O60337 910 aa18.67■□□□□ 0.58
USP4-201ENST00000265560 FLOT1O75955 427 aa18.67■□□□□ 0.58
USP4-201ENST00000265560 ARL6IP4Q66PJ3 421 aaKnown RBP18.67■□□□□ 0.58
USP4-201ENST00000265560 ZNF830Q96NB3 372 aaPredicted RBP18.67■□□□□ 0.58
USP4-201ENST00000265560 EMILIN3Q9NT22 766 aa18.67■□□□□ 0.58
USP4-201ENST00000265560 NLRP12P59046 1061 aa18.67■□□□□ 0.58
USP4-201ENST00000265560 CHURC1Q8WUH1 139 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms