RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 BTAF1O14981 1849 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 PALM3A6NDB9 673 aaPredicted RBP12.99□□□□□ -0.33
VPS4A-201ENST00000254950 GTPBP6O43824 516 aaPredicted RBP12.99□□□□□ -0.33
VPS4A-201ENST00000254950 FDX1P10109 184 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 C9orf131Q5VYM1 1079 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 NCAPG2Q86XI2 1143 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 CPLX3Q8WVH0 158 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 CUEDC2Q9H467 287 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 GINM1Q9NU53 330 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 PCDHA5Q9Y5H7 936 aa12.99□□□□□ -0.33
VPS4A-201ENST00000254950 SHMT1P34896 483 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 ST3GAL1Q11201 340 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 NTRK3Q16288 839 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 DYMQ7RTS9 669 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 FHDC1Q9C0D6 1143 aaPredicted RBP12.98□□□□□ -0.33
VPS4A-201ENST00000254950 MAGEF1Q9HAY2 307 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 IFNKQ9P0W0 207 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 USP17L15C9J2P7 530 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 USP17L13C9JLJ4 530 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 USP17L11C9JVI0 530 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 USP17L18D6R9N7 530 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 USP17L22D6RA61 530 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 USP17L17D6RBQ6 530 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 USP17L19D6RCP7 530 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 USP17L20D6RJB6 530 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 OSBPP22059 807 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 HOXA13P31271 388 aaPredicted RBP12.98□□□□□ -0.33
VPS4A-201ENST00000254950 USP17L24Q0WX57 530 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 HERC4Q5GLZ8 1057 aaPredicted RBP12.98□□□□□ -0.33
VPS4A-201ENST00000254950 USP17L6PQ6QN14 398 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 WNT10BO00744 389 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 SLFN14P0C7P3 912 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 NOM1Q5C9Z4 860 aaKnown RBP12.98□□□□□ -0.33
VPS4A-201ENST00000254950 MIER3Q7Z3K6 550 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 CCAR2Q8N163 923 aaKnown RBP12.98□□□□□ -0.33
VPS4A-201ENST00000254950 ZNF579Q8NAF0 562 aaKnown RBP12.98□□□□□ -0.33
VPS4A-201ENST00000254950 TEKT3Q9BXF9 490 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 MAD2L2Q9UI95 211 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 MAPK8IP1Q9UQF2 711 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 SMIM22K7EJ46 135 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 WDR46O15213 610 aaKnown RBP12.98□□□□□ -0.33
VPS4A-201ENST00000254950 CTNND1O60716 968 aaKnown RBP12.98□□□□□ -0.33
VPS4A-201ENST00000254950 UBXN2AP68543 259 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 CETN1Q12798 172 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 TPH2Q8IWU9 490 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 CCDC150Q8NCX0 1101 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 IL17RBQ9NRM6 502 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 HOXC10Q9NYD6 342 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 CTNND2Q9UQB3 1225 aa12.98□□□□□ -0.33
VPS4A-201ENST00000254950 ABCB11O95342 1321 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 ECM2O94769 699 aaPredicted RBP12.97□□□□□ -0.33
VPS4A-201ENST00000254950 CAP2P40123 477 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 PAK1Q13153 545 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 ORC2Q13416 577 aaPredicted RBP12.97□□□□□ -0.33
VPS4A-201ENST00000254950 GAS2L3Q86XJ1 694 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 ZNF526Q8TF50 670 aaPredicted RBP12.97□□□□□ -0.33
VPS4A-201ENST00000254950 ANKS1AQ92625 1134 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 NRAPQ86VF7 1730 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 LRCH2Q5VUJ6 765 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 PRAMEF18Q5VWM3 479 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 CCDC186Q7Z3E2 898 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 TXLNBQ8N3L3 684 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 PCDHA6Q9UN73 950 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 NFE2L3Q9Y4A8 694 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 PCDHA8Q9Y5H6 950 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 SYNRGQ9UMZ2 1314 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 CCNA1P78396 465 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 BICD1Q96G01 975 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 RIC8AQ9NPQ8 531 aa12.97□□□□□ -0.33
VPS4A-201ENST00000254950 RESP18Q5W5W9 173 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 EPSTI1Q96J88 318 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 WDR11Q9BZH6 1224 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 ADARB2Q9NS39 739 aaKnown RBP12.96□□□□□ -0.33
VPS4A-201ENST00000254950 TMEM260Q9NX78 707 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 FAM198AQ9UFP1 575 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 STXBP3O00186 592 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 FOXP2O15409 715 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 NPM3O75607 178 aaKnown RBP12.96□□□□□ -0.33
VPS4A-201ENST00000254950 CDC25AP30304 524 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 KCTD2Q14681 263 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 ZFPM1Q8IX07 1006 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 ZNF280CQ8ND82 737 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 RBM46Q8TBY0 533 aaKnown RBP12.96□□□□□ -0.33
VPS4A-201ENST00000254950 JMJD4Q9H9V9 463 aa12.96□□□□□ -0.33
VPS4A-201ENST00000254950 RGS17Q9UGC6 210 aaPredicted RBP12.96□□□□□ -0.33
VPS4A-201ENST00000254950 NOP56O00567 594 aaKnown RBP12.96□□□□□ -0.34
VPS4A-201ENST00000254950 MTMR2Q13614 643 aa12.96□□□□□ -0.34
VPS4A-201ENST00000254950 GSDMAQ96QA5 445 aa12.96□□□□□ -0.34
VPS4A-201ENST00000254950 PDCL3Q9H2J4 239 aa12.96□□□□□ -0.34
VPS4A-201ENST00000254950 RAVER2Q9HCJ3 691 aaKnown RBP12.96□□□□□ -0.34
VPS4A-201ENST00000254950 PRR12Q9ULL5 1215 aa12.96□□□□□ -0.34
VPS4A-201ENST00000254950 HMGCS2P54868 508 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 ARHGAP4P98171 946 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 GPBP1Q86WP2 473 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.95□□□□□ -0.342e-6■□□□□ 11.3
VPS4A-201ENST00000254950 C19orf81C9J6K1 198 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 RPL13P26373 211 aaKnown RBP12.95□□□□□ -0.34
VPS4A-201ENST00000254950 CCDC84Q86UT8 332 aaPredicted RBP12.95□□□□□ -0.34
VPS4A-201ENST00000254950 GPC2Q8N158 579 aa12.95□□□□□ -0.34
VPS4A-201ENST00000254950 C2orf69Q8N8R5 385 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms