RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 PRKAG2Q9UGJ0 569 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 PCDHA4Q9UN74 947 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 PCDHB5Q9Y5E4 795 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 SNCAIPQ9Y6H5 919 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 ALS2Q96Q42 1657 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 MBD3O95983 291 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 GARTP22102 1010 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 ZNF165P49910 485 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 SNRPNP63162 240 aaKnown RBP9.39□□□□□ -0.91
CXCR4-201ENST00000241393 GAS2L3Q86XJ1 694 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 UBXN4Q92575 508 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 ZC3H12CQ9C0D7 883 aaKnown RBP9.39□□□□□ -0.91
CXCR4-201ENST00000241393 RNF208Q9H0X6 261 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 C19orf44Q9H6X5 657 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 CYP4F12Q9HCS2 524 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 PALD1Q9ULE6 856 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 ZDHHC9Q9Y397 364 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 TACC3Q9Y6A5 838 aa9.39□□□□□ -0.91
CXCR4-201ENST00000241393 AK9Q5TCS8 1911 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 CILPO75339 1184 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 F13A1P00488 732 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 SPATA31C1P0DKV0 1188 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 IMPDH2P12268 514 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 CCDC173Q0VFZ6 552 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 GPBAR1Q8TDU6 330 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 ELMO3Q96BJ8 720 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 EAF1Q96JC9 268 aaPredicted RBP9.38□□□□□ -0.91
CXCR4-201ENST00000241393 PPP1R9BQ96SB3 815 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.38□□□□□ -0.91
CXCR4-201ENST00000241393 CCDC86Q9H6F5 360 aaKnown RBP9.38□□□□□ -0.91
CXCR4-201ENST00000241393 ECHDC1Q9NTX5 307 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 C9orf78Q9NZ63 289 aaPredicted RBP9.38□□□□□ -0.91
CXCR4-201ENST00000241393 MAP3K2Q9Y2U5 619 aa9.38□□□□□ -0.91
CXCR4-201ENST00000241393 MEGF11A6BM72 1044 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 GRM8O00222 908 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 HIP1O00291 1037 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 APBA3O96018 575 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 ATF4P18848 351 aaPredicted RBP9.37□□□□□ -0.91
CXCR4-201ENST00000241393 PKP1Q13835 747 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 FOXD4L6Q3SYB3 417 aaPredicted RBP9.37□□□□□ -0.91
CXCR4-201ENST00000241393 FOXD4L3Q6VB84 417 aaPredicted RBP9.37□□□□□ -0.91
CXCR4-201ENST00000241393 BNC2Q6ZN30 1099 aaPredicted RBP9.37□□□□□ -0.91
CXCR4-201ENST00000241393 KIAA1211Q6ZU35 1233 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 SLITRK4Q8IW52 837 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 CPLX3Q8WVH0 158 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 LSG1Q9H089 658 aaKnown RBP9.37□□□□□ -0.91
CXCR4-201ENST00000241393 CACNA2D2Q9NY47 1150 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 MRC1P22897 1456 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 COL15A1P39059 1388 aa9.37□□□□□ -0.91
CXCR4-201ENST00000241393 SSBP05455 408 aaKnown RBP eCLIP9.36□□□□□ -0.91
CXCR4-201ENST00000241393 NRG1Q02297 640 aaPredicted RBP9.36□□□□□ -0.91
CXCR4-201ENST00000241393 OS9Q13438 667 aaPredicted RBP9.36□□□□□ -0.91
CXCR4-201ENST00000241393 KIF4BQ2VIQ3 1234 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 SOGA3Q5TF21 947 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 ACAD11Q709F0 780 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 RAPGEF4Q8WZA2 1011 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 ANP32BQ92688 251 aaKnown RBP9.36□□□□□ -0.91
CXCR4-201ENST00000241393 GAL3ST3Q96A11 431 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 TM6SF1Q9BZW5 370 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 RRAGDQ9NQL2 400 aaPredicted RBP9.36□□□□□ -0.91
CXCR4-201ENST00000241393 PICK1Q9NRD5 415 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 UBP1Q9NZI7 540 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 PPP1R1BQ9UD71 204 aaPredicted RBP9.36□□□□□ -0.91
CXCR4-201ENST00000241393 NPHP3Q7Z494 1330 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 SCN11AQ9UI33 1791 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 FAM221AA4D161 298 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 NASPP49321 788 aaPredicted RBP9.36□□□□□ -0.91
CXCR4-201ENST00000241393 PDE4BQ07343 736 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 ZSCAN23Q3MJ62 389 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 SEZ6Q53EL9 994 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 REXO1Q8N1G1 1221 aaKnown RBP9.36□□□□□ -0.91
CXCR4-201ENST00000241393 EVI5LQ96CN4 794 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 TTC14Q96N46 770 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 SLC52A2Q9HAB3 445 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 EFR3BQ9Y2G0 817 aa9.36□□□□□ -0.91
CXCR4-201ENST00000241393 WDR33Q9C0J8 1336 aaKnown RBP9.35□□□□□ -0.91
CXCR4-201ENST00000241393 RNF225M0QZC1 329 aaPredicted RBP9.35□□□□□ -0.91
CXCR4-201ENST00000241393 DDX3YO15523 660 aaKnown RBP9.35□□□□□ -0.91
CXCR4-201ENST00000241393 ANXA1P04083 346 aa9.35□□□□□ -0.91
CXCR4-201ENST00000241393 IFIT2P09913 472 aaKnown RBP9.35□□□□□ -0.91
CXCR4-201ENST00000241393 PROSER3Q2NL68 480 aa9.35□□□□□ -0.91
CXCR4-201ENST00000241393 RASIP1Q5U651 963 aa9.35□□□□□ -0.91
CXCR4-201ENST00000241393 ANKRD34AQ69YU3 496 aa9.35□□□□□ -0.91
CXCR4-201ENST00000241393 ZNF790Q6PG37 636 aa9.35□□□□□ -0.91
CXCR4-201ENST00000241393 REC114Q7Z4M0 266 aa9.35□□□□□ -0.91
CXCR4-201ENST00000241393 TRIM44Q96DX7 344 aaPredicted RBP9.35□□□□□ -0.91
CXCR4-201ENST00000241393 DIAPH3Q9NSV4 1193 aa9.35□□□□□ -0.91
CXCR4-201ENST00000241393 SNX14Q9Y5W7 946 aa9.35□□□□□ -0.91
CXCR4-201ENST00000241393 KDM6AO15550 1401 aaPredicted RBP9.34□□□□□ -0.91
CXCR4-201ENST00000241393 C9orf172C9J069 976 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 TLR3O15455 904 aaKnown RBP9.34□□□□□ -0.91
CXCR4-201ENST00000241393 ADAM11O75078 769 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 AOC2O75106 756 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 PHKG2P15735 406 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 SOX9P48436 509 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 NEXNQ0ZGT2 675 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 HS1BP3Q53T59 392 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 CAVIN1Q6NZI2 390 aaKnown RBP9.34□□□□□ -0.91
CXCR4-201ENST00000241393 FDX2Q6P4F2 183 aa9.34□□□□□ -0.91
CXCR4-201ENST00000241393 UBASH3BQ8TF42 649 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms