RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 ZBTB12Q9Y330 459 aaPredicted RBP26.29■■□□□ 1.8
MSX2-201ENST00000239243 UBASH3AP57075 661 aa26.29■■□□□ 1.8
MSX2-201ENST00000239243 SEMA3FQ13275 785 aa26.29■■□□□ 1.8
MSX2-201ENST00000239243 CACTINQ8WUQ7 758 aaKnown RBP26.29■■□□□ 1.8
MSX2-201ENST00000239243 NAP1L4Q99733 375 aaKnown RBP26.29■■□□□ 1.8
MSX2-201ENST00000239243 MTFR1LQ9H019 292 aa26.29■■□□□ 1.8
MSX2-201ENST00000239243 PSTPIP2Q9H939 334 aa26.29■■□□□ 1.8
MSX2-201ENST00000239243 NFE2L3Q9Y4A8 694 aa26.29■■□□□ 1.8
MSX2-201ENST00000239243 MMP14P50281 582 aa26.28■■□□□ 1.8
MSX2-201ENST00000239243 QRICH1Q2TAL8 776 aa26.28■■□□□ 1.8
MSX2-201ENST00000239243 ZBTB7AO95365 584 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 CDC25AP30304 524 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 FMR1Q06787 632 aaKnown RBP eCLIP26.27■■□□□ 1.8
MSX2-201ENST00000239243 CDC37Q16543 378 aaPredicted RBP26.27■■□□□ 1.8
MSX2-201ENST00000239243 FAM83AQ86UY5 434 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 TAOK3Q9H2K8 898 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 ARHGEF10LQ9HCE6 1279 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 NDUFB10O96000 172 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 MCTP2Q6DN12 878 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 PPP4R3AQ6IN85 833 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 CABP7Q86V35 215 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 JDP2Q8WYK2 163 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 RAB34Q9BZG1 259 aa26.27■■□□□ 1.8
MSX2-201ENST00000239243 TNNI2P48788 182 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 LRMPQ12912 555 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 CALCRLQ16602 461 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 TMEM266Q2M3C6 531 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 CCDC150Q8NCX0 1101 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 CNTNAP1P78357 1384 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 BMP3P12645 472 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 GCFC2P16383 781 aaKnown RBP26.26■■□□□ 1.79
MSX2-201ENST00000239243 CASP1P29466 404 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 POTEDQ86YR6 584 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 STAMQ92783 540 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 MTRQ99707 1265 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 PCDHA1Q9Y5I3 950 aa26.26■■□□□ 1.79
MSX2-201ENST00000239243 PP2D1A8MPX8 630 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 TBC1D12O60347 775 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 ZNF18P17022 549 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 CXCL9Q07325 125 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 CUL4BQ13620 913 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 CIAPIN1Q6FI81 312 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 TMC6Q7Z403 805 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 IGSF22Q8N9C0 903 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 MTMR9Q96QG7 549 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 BLZF1Q9H2G9 400 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 VEZTQ9HBM0 779 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 SYNRGQ9UMZ2 1314 aa26.25■■□□□ 1.79
MSX2-201ENST00000239243 CDK11BP21127 795 aaKnown RBP26.24■■□□□ 1.79
MSX2-201ENST00000239243 FXR2P51116 673 aaKnown RBP eCLIP26.24■■□□□ 1.79
MSX2-201ENST00000239243 NAALADL2Q58DX5 795 aa26.24■■□□□ 1.79
MSX2-201ENST00000239243 NAP1L5Q96NT1 182 aaPredicted RBP26.24■■□□□ 1.79
MSX2-201ENST00000239243 AMNQ9BXJ7 453 aa26.24■■□□□ 1.79
MSX2-201ENST00000239243 FER1L6Q2WGJ9 1857 aa26.24■■□□□ 1.79
MSX2-201ENST00000239243 RPN1P04843 607 aaKnown RBP26.24■■□□□ 1.79
MSX2-201ENST00000239243 UBE2SQ16763 222 aa26.24■■□□□ 1.79
MSX2-201ENST00000239243 SPATA1Q5VX52 437 aa26.24■■□□□ 1.79
MSX2-201ENST00000239243 TECP42680 631 aa26.23■■□□□ 1.79
MSX2-201ENST00000239243 IKQ13123 557 aaPredicted RBP26.23■■□□□ 1.79
MSX2-201ENST00000239243 DNTTIP2Q5QJE6 756 aaKnown RBP26.23■■□□□ 1.79
MSX2-201ENST00000239243 ZNF658Q5TYW1 1059 aaPredicted RBP26.23■■□□□ 1.79
MSX2-201ENST00000239243 SYDE2Q5VT97 1194 aa26.23■■□□□ 1.79
MSX2-201ENST00000239243 BTNL9Q6UXG8 535 aa26.23■■□□□ 1.79
MSX2-201ENST00000239243 KBTBD4Q9NVX7 518 aa26.23■■□□□ 1.79
MSX2-201ENST00000239243 BRCA1P38398 1863 aaKnown RBP26.23■■□□□ 1.79
MSX2-201ENST00000239243 JAG1P78504 1218 aa26.23■■□□□ 1.79
MSX2-201ENST00000239243 RRP1BQ14684 758 aaKnown RBP26.23■■□□□ 1.79
MSX2-201ENST00000239243 TNIP1Q15025 636 aa26.23■■□□□ 1.79
MSX2-201ENST00000239243 TRMT44Q8IYL2 757 aaKnown RBP26.23■■□□□ 1.79
MSX2-201ENST00000239243 CALML4Q96GE6 196 aa26.23■■□□□ 1.79
MSX2-201ENST00000239243 PPP1R3GB7ZBB8 358 aa26.22■■□□□ 1.79
MSX2-201ENST00000239243 NRDCO43847 1150 aa26.22■■□□□ 1.79
MSX2-201ENST00000239243 TERF1P54274 439 aa26.22■■□□□ 1.79
MSX2-201ENST00000239243 PDIA5Q14554 519 aa26.22■■□□□ 1.79
MSX2-201ENST00000239243 KCNB1Q14721 858 aa26.22■■□□□ 1.79
MSX2-201ENST00000239243 ZBED3Q96IU2 234 aaPredicted RBP26.22■■□□□ 1.79
MSX2-201ENST00000239243 GOPCQ9HD26 462 aa26.22■■□□□ 1.79
MSX2-201ENST00000239243 ATF5Q9Y2D1 282 aaPredicted RBP26.22■■□□□ 1.79
MSX2-201ENST00000239243 TDP2O95551 362 aa26.22■■□□□ 1.79
MSX2-201ENST00000239243 TXKP42681 527 aa26.22■■□□□ 1.79
MSX2-201ENST00000239243 TRAF1Q13077 416 aa26.22■■□□□ 1.79
MSX2-201ENST00000239243 AP3B2Q13367 1082 aa26.22■■□□□ 1.79
MSX2-201ENST00000239243 C17orf53Q8N3J3 647 aaPredicted RBP26.22■■□□□ 1.79
MSX2-201ENST00000239243 TMEM232C9JQI7 657 aa26.21■■□□□ 1.79
MSX2-201ENST00000239243 CD44P16070 742 aaKnown RBP26.21■■□□□ 1.79
MSX2-201ENST00000239243 FBXO11Q86XK2 927 aa26.21■■□□□ 1.79
MSX2-201ENST00000239243 ZBTB21Q9ULJ3 1066 aa26.21■■□□□ 1.79
MSX2-201ENST00000239243 TMX2Q9Y320 296 aa26.21■■□□□ 1.79
MSX2-201ENST00000239243 PLCG1P19174 1290 aa26.2■■□□□ 1.79
MSX2-201ENST00000239243 KLHL10Q6JEL2 608 aa26.2■■□□□ 1.79
MSX2-201ENST00000239243 MED15Q96RN5 788 aa26.2■■□□□ 1.79
MSX2-201ENST00000239243 LRWD1Q9UFC0 647 aa26.2■■□□□ 1.79
MSX2-201ENST00000239243 SLC37A4O43826 429 aa26.2■■□□□ 1.78
MSX2-201ENST00000239243 SFPQP23246 707 aaKnown RBP eCLIP26.2■■□□□ 1.78
MSX2-201ENST00000239243 AMPD3Q01432 767 aa26.2■■□□□ 1.78
MSX2-201ENST00000239243 CCDC47Q96A33 483 aaKnown RBP26.2■■□□□ 1.78
MSX2-201ENST00000239243 NUP88Q99567 741 aaPredicted RBP26.2■■□□□ 1.78
MSX2-201ENST00000239243 GTPBP4Q9BZE4 634 aaKnown RBP26.2■■□□□ 1.78
MSX2-201ENST00000239243 SH2D4AQ9H788 454 aa26.2■■□□□ 1.78
MSX2-201ENST00000239243 DDX25Q9UHL0 483 aaKnown RBP26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms