RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 LLPHQ9BRT6 129 aaKnown RBP9.91□□□□□ -0.82
VPS4B-201ENST00000238497 CBX8Q9HC52 389 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 CLIP2Q9UDT6 1046 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 MYH1P12882 1939 aa9.91□□□□□ -0.82
VPS4B-201ENST00000238497 MYCNP04198 464 aaPredicted RBP9.9□□□□□ -0.82
VPS4B-201ENST00000238497 ERVK-9P63128 1117 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 ERVK-24P63145 666 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 CCNA1P78396 465 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 Q3C1V9 767 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 C16orf86Q6ZW13 317 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 KANSL2Q9H9L4 492 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 VAT1LQ9HCJ6 419 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 DDX19AQ9NUU7 478 aaKnown RBP9.9□□□□□ -0.82
VPS4B-201ENST00000238497 STX8Q9UNK0 236 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 V9GY48 417 aaPredicted RBP9.9□□□□□ -0.82
VPS4B-201ENST00000238497 NDUFA8P51970 172 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 NR5A1Q13285 461 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 SMARCC2Q8TAQ2 1214 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 ZNF592Q92610 1267 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 IL17RAQ96F46 866 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 ZNF333Q96JL9 665 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 PORCNQ9H237 461 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 VPS54Q9P1Q0 977 aa9.9□□□□□ -0.82
VPS4B-201ENST00000238497 CDKL5O76039 1030 aa9.9□□□□□ -0.83
VPS4B-201ENST00000238497 HOXA7P31268 230 aaPredicted RBP9.9□□□□□ -0.83
VPS4B-201ENST00000238497 IFIT1BQ5T764 474 aaKnown RBP9.9□□□□□ -0.83
VPS4B-201ENST00000238497 MYSM1Q5VVJ2 828 aa9.9□□□□□ -0.83
VPS4B-201ENST00000238497 NCAPG2Q86XI2 1143 aa9.9□□□□□ -0.83
VPS4B-201ENST00000238497 LRRC47Q8N1G4 583 aaKnown RBP9.9□□□□□ -0.83
VPS4B-201ENST00000238497 ARMC5Q96C12 935 aa9.9□□□□□ -0.83
VPS4B-201ENST00000238497 NUP88Q99567 741 aaPredicted RBP9.9□□□□□ -0.83
VPS4B-201ENST00000238497 NUDT12Q9BQG2 462 aa9.9□□□□□ -0.83
VPS4B-201ENST00000238497 RBPJLQ9UBG7 517 aa9.9□□□□□ -0.83
VPS4B-201ENST00000238497 NRBP1Q9UHY1 535 aa9.9□□□□□ -0.83
VPS4B-201ENST00000238497 MRVI1Q9Y6F6 885 aa9.9□□□□□ -0.83
VPS4B-201ENST00000238497 DOCK3Q8IZD9 2030 aa9.9□□□□□ -0.83
VPS4B-201ENST00000238497 ADGRA2Q96PE1 1338 aa9.9□□□□□ -0.83
VPS4B-201ENST00000238497 MAST2Q6P0Q8 1798 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 SH2B2O14492 632 aaPredicted RBP9.89□□□□□ -0.83
VPS4B-201ENST00000238497 INHAP05111 366 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 COG2Q14746 738 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 IQCA1Q86XH1 822 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 TMEM87AQ8NBN3 555 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 KRT23Q9C075 422 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 DOCK1Q14185 1865 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 AP5Z1O43299 807 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 SMC2O95347 1197 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 CCL5P13501 91 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 PTGS1P23219 599 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 TFAP4Q01664 338 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 CATSPERGQ6ZRH7 1159 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 AOPEPQ8N6M6 819 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 SLAIN1Q8ND83 568 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 FAM200AQ8TCP9 573 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 ESR2Q92731 530 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 DEFB118Q96PH6 123 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 FBXO28Q9NVF7 368 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 HOXC10Q9NYD6 342 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 TRIOBPQ9H2D6 2365 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 TNKSO95271 1327 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 BAZ2AQ9UIF9 1905 aaKnown RBP9.89□□□□□ -0.83
VPS4B-201ENST00000238497 TFRCP02786 760 aaKnown RBP9.89□□□□□ -0.83
VPS4B-201ENST00000238497 FAM83BQ5T0W9 1011 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 C11orf57Q6ZUT1 292 aaPredicted RBP9.89□□□□□ -0.83
VPS4B-201ENST00000238497 CCDC186Q7Z3E2 898 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 CPXCR1Q8N123 301 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 RASSF8Q8NHQ8 419 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 MRPS27Q92552 414 aaKnown RBP9.89□□□□□ -0.83
VPS4B-201ENST00000238497 ATG4CQ96DT6 458 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 UNC93B1Q9H1C4 597 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 CLSTN2Q9H4D0 955 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 VCPKMTQ9H867 229 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 GOPCQ9HD26 462 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 FAM13BQ9NYF5 915 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 ZKSCAN5Q9Y2L8 839 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 TACC3Q9Y6A5 838 aa9.89□□□□□ -0.83
VPS4B-201ENST00000238497 RASA1P20936 1047 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 CNGA1P29973 690 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 ANO1Q5XXA6 986 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 PLEKHH3Q7Z736 793 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 DPP9Q86TI2 863 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 DIS3L2Q8IYB7 885 aaKnown RBP9.88□□□□□ -0.83
VPS4B-201ENST00000238497 LY9Q9HBG7 655 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 RABGAP1Q9Y3P9 1069 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 MAPK4P31152 587 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 LRMPQ12912 555 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 HOMER1Q86YM7 354 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 ZNF654Q8IZM8 581 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 IGDCC4Q8TDY8 1250 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 STAMQ92783 540 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 CPVLQ9H3G5 476 aa9.88□□□□□ -0.83
VPS4B-201ENST00000238497 SPDYE16A6NNV3 312 aaPredicted RBP9.87□□□□□ -0.83
VPS4B-201ENST00000238497 SBK1Q52WX2 424 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 KIAA1755Q5JYT7 1200 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 GPR142Q7Z601 462 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 CATIPQ7Z7H3 387 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 TSC1Q92574 1164 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 DPF3Q92784 378 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 KIFC2Q96AC6 838 aa9.87□□□□□ -0.83
VPS4B-201ENST00000238497 TMEM87BQ96K49 555 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms