RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 PNMA2Q9UL42 364 aa31.42■■■□□ 2.62
CHMP4B-201ENST00000217402 ABCB11O95342 1321 aa31.41■■■□□ 2.62
CHMP4B-201ENST00000217402 NCAPG2Q86XI2 1143 aa31.41■■■□□ 2.62
CHMP4B-201ENST00000217402 RNF146Q9NTX7 359 aa31.41■■■□□ 2.62
CHMP4B-201ENST00000217402 hCG_1984214I3L0E3 225 aa31.4■■■□□ 2.62
CHMP4B-201ENST00000217402 TRAF1Q13077 416 aa31.4■■■□□ 2.62
CHMP4B-201ENST00000217402 ZNF713Q8N859 430 aaPredicted RBP31.4■■■□□ 2.62
CHMP4B-201ENST00000217402 SHISA4Q96DD7 197 aa31.4■■■□□ 2.62
CHMP4B-201ENST00000217402 TRERF1Q96PN7 1200 aa31.4■■■□□ 2.62
CHMP4B-201ENST00000217402 KIF3AQ9Y496 699 aa31.4■■■□□ 2.62
CHMP4B-201ENST00000217402 ECM2O94769 699 aaPredicted RBP31.39■■■□□ 2.62
CHMP4B-201ENST00000217402 CCNA1P78396 465 aa31.39■■■□□ 2.62
CHMP4B-201ENST00000217402 BEGAINQ9BUH8 593 aa31.39■■■□□ 2.62
CHMP4B-201ENST00000217402 PORCNQ9H237 461 aa31.39■■■□□ 2.62
CHMP4B-201ENST00000217402 ERCC3P19447 782 aa31.38■■■□□ 2.61
CHMP4B-201ENST00000217402 MUM1L1Q5H9M0 696 aa31.38■■■□□ 2.61
CHMP4B-201ENST00000217402 WDR78Q5VTH9 848 aa31.38■■■□□ 2.61
CHMP4B-201ENST00000217402 CFHR5Q9BXR6 569 aa31.38■■■□□ 2.61
CHMP4B-201ENST00000217402 MRPL11Q9Y3B7 192 aaKnown RBP31.38■■■□□ 2.61
CHMP4B-201ENST00000217402 SMCHD1A6NHR9 2005 aa31.38■■■□□ 2.61
CHMP4B-201ENST00000217402 C8orf76Q96K31 380 aa31.38■■■□□ 2.61
CHMP4B-201ENST00000217402 EFCC1Q9HA90 598 aa31.38■■■□□ 2.61
CHMP4B-201ENST00000217402 SAGE1Q9NXZ1 904 aa31.38■■■□□ 2.61
CHMP4B-201ENST00000217402 NFIBO00712 420 aa31.37■■■□□ 2.61
CHMP4B-201ENST00000217402 SLC25A27O95847 323 aa31.37■■■□□ 2.61
CHMP4B-201ENST00000217402 TKFCQ3LXA3 575 aa31.37■■■□□ 2.61
CHMP4B-201ENST00000217402 PPP1R18Q6NYC8 613 aa31.37■■■□□ 2.61
CHMP4B-201ENST00000217402 CCAR1Q8IX12 1150 aaKnown RBP31.37■■■□□ 2.61
CHMP4B-201ENST00000217402 KCNJ14Q9UNX9 436 aa31.37■■■□□ 2.61
CHMP4B-201ENST00000217402 XBP1P17861 261 aa31.36■■■□□ 2.61
CHMP4B-201ENST00000217402 GUCY1B3Q02153 619 aa31.36■■■□□ 2.61
CHMP4B-201ENST00000217402 CCDC148Q8NFR7 591 aa31.36■■■□□ 2.61
CHMP4B-201ENST00000217402 CCDC12Q8WUD4 166 aaPredicted RBP31.36■■■□□ 2.61
CHMP4B-201ENST00000217402 CLEC4DQ8WXI8 215 aa31.36■■■□□ 2.61
CHMP4B-201ENST00000217402 SH3GLB2Q9NR46 395 aa31.36■■■□□ 2.61
CHMP4B-201ENST00000217402 TRIM29Q14134 588 aa31.35■■■□□ 2.61
CHMP4B-201ENST00000217402 ACAD9Q9H845 621 aa31.35■■■□□ 2.61
CHMP4B-201ENST00000217402 TSKSQ9UJT2 592 aa31.35■■■□□ 2.61
CHMP4B-201ENST00000217402 OPLAHO14841 1288 aa31.35■■■□□ 2.61
CHMP4B-201ENST00000217402 COPB2P35606 906 aa31.35■■■□□ 2.61
CHMP4B-201ENST00000217402 NLRP5P59047 1200 aa31.35■■■□□ 2.61
CHMP4B-201ENST00000217402 SHCBP1Q8NEM2 672 aa31.35■■■□□ 2.61
CHMP4B-201ENST00000217402 CHST13Q8NET6 341 aa31.35■■■□□ 2.61
CHMP4B-201ENST00000217402 CWC22Q9HCG8 908 aaKnown RBP31.35■■■□□ 2.61
CHMP4B-201ENST00000217402 SMCO2A6NFE2 343 aa31.34■■■□□ 2.61
CHMP4B-201ENST00000217402 LARP1BQ659C4 914 aaKnown RBP31.34■■■□□ 2.61
CHMP4B-201ENST00000217402 MROH8Q9H579 483 aa31.34■■■□□ 2.61
CHMP4B-201ENST00000217402 WBP1LQ9NX94 342 aa31.34■■■□□ 2.61
CHMP4B-201ENST00000217402 KRT40Q6A162 431 aa31.33■■■□□ 2.61
CHMP4B-201ENST00000217402 NSMFQ6X4W1 530 aa31.33■■■□□ 2.61
CHMP4B-201ENST00000217402 PSTPIP2Q9H939 334 aa31.33■■■□□ 2.61
CHMP4B-201ENST00000217402 FBXO40Q9UH90 709 aa31.33■■■□□ 2.61
CHMP4B-201ENST00000217402 ADCY7P51828 1080 aa31.32■■■□□ 2.6
CHMP4B-201ENST00000217402 IPO9Q96P70 1041 aaKnown RBP31.32■■■□□ 2.6
CHMP4B-201ENST00000217402 CFBP00751 764 aa31.31■■■□□ 2.6
CHMP4B-201ENST00000217402 TBC1D5Q92609 795 aa31.31■■■□□ 2.6
CHMP4B-201ENST00000217402 PHF20Q9BVI0 1012 aa31.31■■■□□ 2.6
CHMP4B-201ENST00000217402 ZMYND12Q9H0C1 365 aa31.31■■■□□ 2.6
CHMP4B-201ENST00000217402 C6orf50Q9HD87 102 aa31.31■■■□□ 2.6
CHMP4B-201ENST00000217402 MAPK4P31152 587 aa31.31■■■□□ 2.6
CHMP4B-201ENST00000217402 FBXO18Q8NFZ0 1043 aa31.31■■■□□ 2.6
CHMP4B-201ENST00000217402 CUL5Q93034 780 aa31.31■■■□□ 2.6
CHMP4B-201ENST00000217402 ESYT2A0FGR8 921 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 H3BQV1 296 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 GPR25O00155 361 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 ADAMTS3O15072 1205 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 PDCP20941 246 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 SP3Q02447 781 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 UBE2SQ16763 222 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 IFFO2Q5TF58 517 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 GPR142Q7Z601 462 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 MCF2L2Q86YR7 1114 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 RIC8AQ9NPQ8 531 aa31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 A1CFQ9NQ94 594 aaKnown RBP31.3■■■□□ 2.6
CHMP4B-201ENST00000217402 HOXA13P31271 388 aaPredicted RBP31.29■■■□□ 2.6
CHMP4B-201ENST00000217402 USP17L6PQ6QN14 398 aa31.29■■■□□ 2.6
CHMP4B-201ENST00000217402 ANKRD35Q8N283 1001 aa31.29■■■□□ 2.6
CHMP4B-201ENST00000217402 MMP1P03956 469 aa31.28■■■□□ 2.6
CHMP4B-201ENST00000217402 SYT1P21579 422 aa31.28■■■□□ 2.6
CHMP4B-201ENST00000217402 GNA11P29992 359 aa31.28■■■□□ 2.6
CHMP4B-201ENST00000217402 LACTBP83111 547 aaPredicted RBP31.28■■■□□ 2.6
CHMP4B-201ENST00000217402 SLC30A10Q6XR72 485 aa31.28■■■□□ 2.6
CHMP4B-201ENST00000217402 RNF207Q6ZRF8 634 aa31.28■■■□□ 2.6
CHMP4B-201ENST00000217402 MMP19Q99542 508 aa31.28■■■□□ 2.6
CHMP4B-201ENST00000217402 IVNS1ABPQ9Y6Y0 642 aa31.28■■■□□ 2.6
CHMP4B-201ENST00000217402 VPS37CA5D8V6 355 aaPredicted RBP31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 GCOM1H8Y6P7 765 aaPredicted RBP31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 POLR2MP0CAP2 368 aa31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 CALML3P27482 149 aa31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 MRPL12P52815 198 aaKnown RBP31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 KCTD2Q14681 263 aa31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 NPY5RQ15761 445 aa31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 PLEKHH3Q7Z736 793 aa31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 FAM177A1Q8N128 213 aaPredicted RBP31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 JMYQ8N9B5 988 aa31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 ARHGAP39Q9C0H5 1083 aa31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 PCDHA4Q9UN74 947 aa31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 RBBP6Q7Z6E9 1792 aaKnown RBP31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 FCER1AP12319 257 aa31.27■■■□□ 2.6
CHMP4B-201ENST00000217402 RPS6P62753 249 aaKnown RBP31.27■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms