RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MYH1P12882 1939 aa12□□□□□ -0.49
USP28-201ENST00000003302 AGPSO00116 658 aa12□□□□□ -0.49
USP28-201ENST00000003302 RPS8P62241 208 aaKnown RBP12□□□□□ -0.49
USP28-201ENST00000003302 FAM193AP78312 1265 aa12□□□□□ -0.49
USP28-201ENST00000003302 C10orf67Q8IYJ2 551 aa12□□□□□ -0.49
USP28-201ENST00000003302 CCDC102AQ96A19 550 aa12□□□□□ -0.49
USP28-201ENST00000003302 COA7Q96BR5 231 aa12□□□□□ -0.49
USP28-201ENST00000003302 TUBGCP2Q9BSJ2 902 aa12□□□□□ -0.49
USP28-201ENST00000003302 MXD3Q9BW11 206 aa12□□□□□ -0.49
USP28-201ENST00000003302 IKZF4Q9H2S9 585 aa12□□□□□ -0.49
USP28-201ENST00000003302 LRWD1Q9UFC0 647 aa12□□□□□ -0.49
USP28-201ENST00000003302 FEZ2Q9UHY8 353 aaPredicted RBP12□□□□□ -0.49
USP28-201ENST00000003302 HIBADHP31937 336 aaKnown RBP12□□□□□ -0.49
USP28-201ENST00000003302 ARHGAP20Q9P2F6 1191 aa12□□□□□ -0.49
USP28-201ENST00000003302 IRS2Q9Y4H2 1338 aa12□□□□□ -0.49
USP28-201ENST00000003302 CCNT1O60563 726 aaKnown RBP11.99□□□□□ -0.49
USP28-201ENST00000003302 TDP2O95551 362 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 BBXQ8WY36 941 aaPredicted RBP11.99□□□□□ -0.49
USP28-201ENST00000003302 MS4A14Q96JA4 679 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 KBTBD4Q9NVX7 518 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 UBE4AQ14139 1066 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 C12orf60Q5U649 245 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 TBC1D7Q9P0N9 293 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 PACSIN2Q9UNF0 486 aaPredicted RBP11.99□□□□□ -0.49
USP28-201ENST00000003302 LGALS16A8MUM7 142 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 NFRKBQ6P4R8 1299 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 CSGALNACT2Q8N6G5 542 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 TRIM9Q9C026 710 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 PCDHA4Q9UN74 947 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 SPATA31A1Q5TZJ5 1347 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 RNASE9P60153 205 aaKnown RBP11.99□□□□□ -0.49
USP28-201ENST00000003302 CYP26C1Q6V0L0 522 aa11.99□□□□□ -0.49
USP28-201ENST00000003302 NHEJ1Q9H9Q4 299 aaPredicted RBP11.99□□□□□ -0.49
USP28-201ENST00000003302 XBP1P17861 261 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 RASA1P20936 1047 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 USP5P45974 858 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 SF3B3Q15393 1217 aaKnown RBP11.98□□□□□ -0.49
USP28-201ENST00000003302 ENOX2Q16206 610 aaKnown RBP11.98□□□□□ -0.49
USP28-201ENST00000003302 CNOT6LQ96LI5 555 aaKnown RBP11.98□□□□□ -0.49
USP28-201ENST00000003302 PIGSQ96S52 555 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 ITIH6Q6UXX5 1313 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 ROBO1Q9Y6N7 1651 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 ESYT3A0FGR9 886 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 DDAH1O94760 285 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 TXKP42681 527 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 CHADLQ6NUI6 762 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 GIMAP8Q8ND71 665 aaPredicted RBP11.98□□□□□ -0.49
USP28-201ENST00000003302 DNAJC7Q99615 494 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 KAT14Q9H8E8 782 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 FAM204AQ9H8W3 233 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 CTAGE15A4D2H0 777 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 ORC4O43929 436 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 MOCS3O95396 460 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 CTAGE8P0CG41 777 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 FILIP1LQ4L180 1135 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 DNAJC21Q5F1R6 531 aaKnown RBP11.98□□□□□ -0.49
USP28-201ENST00000003302 DTHD1Q6ZMT9 781 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 CTAGE6Q86UF2 777 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 TMTC1Q8IUR5 882 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 CTAGE4Q8IX94 777 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 PCDHAC2Q9Y5I4 1007 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 TNRC6CQ9HCJ0 1690 aaKnown RBP11.98□□□□□ -0.49
USP28-201ENST00000003302 TRIM21P19474 475 aaKnown RBP11.98□□□□□ -0.49
USP28-201ENST00000003302 PDE4DQ08499 809 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 PARP10Q53GL7 1025 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 OR8K1Q8NGG5 319 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 CRACR2AQ9BSW2 395 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 BLOC1S4Q9NUP1 217 aa11.98□□□□□ -0.49
USP28-201ENST00000003302 LUC7L2Q9Y383 392 aaKnown RBP11.98□□□□□ -0.49
USP28-201ENST00000003302 PDS5AQ29RF7 1337 aaKnown RBP11.97□□□□□ -0.49
USP28-201ENST00000003302 NPHP3-ACAD11A0A0J9YXS1 232 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 USP17L5A8MUK1 530 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 KLRF2D3W0D1 207 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 GOLGA6L9A6NEM1 432 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 MYMKA6NI61 221 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 MYO1BO43795 1136 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 UBA7P41226 1012 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 LRRC47Q8N1G4 583 aaKnown RBP11.97□□□□□ -0.49
USP28-201ENST00000003302 CEP95Q96GE4 821 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 RBM28Q9NW13 759 aaKnown RBP11.97□□□□□ -0.49
USP28-201ENST00000003302 CCDC194A0A1B0GVG4 234 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 BUB1O43683 1085 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 GGCXP38435 758 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 TBC1D8BQ0IIM8 1120 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 UBE2SQ16763 222 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 DZIP1Q86YF9 867 aaKnown RBP11.97□□□□□ -0.49
USP28-201ENST00000003302 TBCKQ8TEA7 893 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 JAKMIP2Q96AA8 810 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 LRRC1Q9BTT6 524 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 TRIM34Q9BYJ4 488 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 SNED1Q8TER0 1413 aa11.97□□□□□ -0.49
USP28-201ENST00000003302 FAM196BA6NMK8 535 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 POLD1P28340 1107 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 MTMR8Q96EF0 704 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 MKNK2Q9HBH9 465 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 PRPF6O94906 941 aaKnown RBP11.96□□□□□ -0.49
USP28-201ENST00000003302 ASIC1P78348 528 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 GFPT1Q06210 699 aaPredicted RBP11.96□□□□□ -0.49
USP28-201ENST00000003302 LRRC31Q6UY01 552 aa11.96□□□□□ -0.49
USP28-201ENST00000003302 TSEN2Q8NCE0 465 aaKnown RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms