RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Nyap1Q6PFX7 833 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Klhl7Q8BUL5 586 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Alg3Q8K2A8 438 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Appl2Q8K3G9 662 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Mis12Q9CY25 206 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Acsl3Q9CZW4 720 aaKnown RBP17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Eddm13E9Q7F5 164 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Pik3c2bE9QAN8 1632 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 WaplQ65Z40 1200 aaKnown RBP17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 KaznQ69ZS8 779 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Scyl2Q8CFE4 930 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Glrx3Q9CQM9 337 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 AacsQ9D2R0 672 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Spef2Q8C9J3 1734 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Nek1P51954 1203 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Anks1aP59672 1150 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Mier3Q3UHF3 551 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ift20Q61025 132 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Rab11fip4Q8BQP8 635 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Krt222Q8CCX5 294 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Cacnb1Q8R3Z5 597 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Pramel3A2AHA7 463 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Armc3A2AU72 881 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Gm7903A2AWL1 463 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 AV320801A2AWL3 467 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Gm15023L7MUB4 467 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Neurog2P70447 263 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Nab2Q61127 525 aa17.12■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Gm2030D3Z7C4 212 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Acot11Q8VHQ9 594 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Tnpo2Q99LG2 887 aaKnown RBP17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Gm28042B7ZCM9 1014 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Gna15P30678 374 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 TbcbQ9D1E6 244 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Tacc3Q9JJ11 631 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Sept6Q9R1T4 434 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ccdc6D3YZP9 469 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Svs3aF2Z472 265 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Lmbrd1Q8K0B2 537 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 SnrkQ8VDU5 748 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Kif1aP33173 1695 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Irf5P56477 497 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Fermt1P59113 677 aa17.11■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Fkbp1aP26883 108 aaKnown RBP17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Sp8Q8BMJ8 486 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ppp2r5dQ91V89 594 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 1700020D05RikQ99PB1 294 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 MetP16056 1379 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Thap2Q9D305 217 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Myo3bQ1EG27 1305 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Pfkfb3A7UAK5 555 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Gm10110D3Z5M2 615 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Dnajb6O54946 365 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Pde4aO89084 844 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Pla2g4bP0C871 782 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Hspa1lP16627 641 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Traf5P70191 558 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Agbl1Q09M05 972 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Gm5169Q5M8P2 212 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Dhx30Q99PU8 1217 aaKnown RBP17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ccdc91Q9D8L5 442 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ccdc78D3Z5T1 437 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Dnajc17Q91WT4 303 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 WaslQ91YD9 501 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 SarnpQ9D1J3 210 aaKnown RBP17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Sept12Q9D451 317 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Pex11aQ9Z211 246 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Kiaa0232Q80U59 1396 aaKnown RBP17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Rgs12Q8CGE9 1381 aa17.1■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ifi207E9Q3L4 978 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Nr5a1P33242 462 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Dact3Q0PHV7 610 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Spa17Q62252 149 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 NkapQ9D0F4 415 aaKnown RBP17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Saal1Q9D2C2 474 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Arhgap33Q80YF9 1305 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ctnna3Q65CL1 895 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Dhx37Q6NZL1 1150 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Cfap57Q9D180 1249 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Krt34Q9D646 392 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Gngt1Q61012 74 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Kiaa1328Q6NZK5 612 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Nucks1Q80XU3 234 aaKnown RBP17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Haus1Q8BHX1 278 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Efcab8Q8C9R9 203 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Bicdl2Q8CHW5 507 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Glt1d1A4FUP9 346 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ddx23D3Z0M9 819 aaKnown RBP17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Q3TYL0 343 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Usp49Q6P9L4 685 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 GypcQ78HU7 95 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Ccdc38Q8CDN8 563 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Spata4Q8K3V1 295 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Fsip1Q9D3V5 435 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Tmem47Q9JJG6 181 aa17.09■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 DgkiD3YWQ0 1071 aa17.08■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Pcdha4O88689 947 aa17.08■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Gucy2cQ3UWA6 1072 aa17.08■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 HhatQ8BMT9 499 aa17.08■□□□□ 0.33
Ccdc88b-201ENSMUST00000113440 Cacnb3P54285 484 aa17.08■□□□□ 0.32
Retrieved 100 of 22,080 RNA–protein pairs in 23.4 ms